Nikki E. Freed
Nikki E. Freed
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Self-destructive cooperation mediated by phenotypic noise
M Ackermann, B Stecher, NE Freed, P Songhet, WD Hardt, M Doebeli
Nature 454 (7207), 987-990, 2008
Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance
DJ Ecker, R Sampath, LB Blyn, MW Eshoo, C Ivy, JA Ecker, B Libby, ...
Proceedings of the National Academy of Sciences 102 (22), 8012-8017, 2005
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding
NE Freed, M Vlkovß, MB Faisal, OK Silander
Biology Methods and Protocols 5 (1), bpaa014, 2020
Transmission dynamics and prospective environmental sampling of adenovirus in a military recruit setting
KL Russell, MP Broderick, SE Franklin, LB Blyn, NE Freed, E Moradi, ...
The Journal of Infectious Diseases 194 (7), 877-885, 2006
Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch
┴ O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ...
Wellcome Open Research 6, 2021
Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads
WS Pearman, NE Freed, OK Silander
BMC bioinformatics 21, 1-15, 2020
A simple screen to identify promoters conferring high levels of phenotypic noise
NE Freed, OK Silander, B Stecher, A B÷hm, WD Hardt, M Ackermann
PLoS genetics 4 (12), e1000307, 2008
Rapid detection and molecular serotyping of adenovirus by use of PCR followed by electrospray ionization mass spectrometry
LB Blyn, TA Hall, B Libby, R Ranken, R Sampath, K Rudnick, E Moradi, ...
Journal of clinical microbiology 46 (2), 644-651, 2008
Molecular analysis of adenovirus isolates from vaccinated and unvaccinated young adults
DA Blasiole, D Metzgar, LT Daum, MAK Ryan, J Wu, C Wills, CT Le, ...
Journal of clinical microbiology 42 (4), 1686-1693, 2004
Co-infections of adenovirus species in previously vaccinated patients
GJ Vora, B Lin, K Gratwick, C Meador, C Hansen, C Tibbetts, DA Stenger, ...
Emerging infectious diseases 12 (6), 921, 2006
Use of genomics to track coronavirus disease outbreaks, New Zealand
JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ...
Emerging Infectious Diseases 27 (5), 1317, 2021
Effectiveness of the 2003–2004 influenza vaccine among US military basic trainees: a year of suboptimal match between vaccine and circulating strain
KL Russell, MAK Ryan, A Hawksworth, NE Freed, M Irvine, LT Daum, ...
Vaccine 23 (16), 1981-1985, 2005
Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality
NE Freed, D Bumann, OK Silander
BMC Microbiology 16 (203), 1-14, 2016
Creation of a dense transposon insertion library using bacterial conjugation in enterobacterial strains such as Escherichia coli or Shigella flexneri
NE Freed
JoVE (Journal of Visualized Experiments), e56216, 2017
SARS-CoV2 genome sequencing protocol (1200bp amplicon" midnight" primer set, using Nanopore Rapid kit)
N Freed, O Silander
Diagnostic discrimination of live attenuated influenza vaccine strains and community-acquired pathogenic strains in clinical samples
NE Freed, CA Myers, KL Russell, EA Walter, M Irvine, RG Coon, ...
Molecular and cellular probes 21 (2), 103-110, 2007
Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
WS Pearman, SJ Wells, OK Silander, NE Freed, J Dale
Ecology and Evolution 10 (24), 13624-13639, 2020
New tools for diet analysis: nanopore sequencing of metagenomic DNA from rat stomach contents to quantify diet
NE Freed, WS Pearman, ANH Smith, G Breckell, J Dale, OK Silander
Complete genome sequences of cluster a mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih
KA Butela, SMR Gurney, HL Hendrickson, JM LeBlanc-Straceski, ...
Genome Announcements 5 (43), 10.1128/genomea. 01182-17, 2017
Surveillance for febrile respiratory infections during Cobra Gold 2003
J Fuller, K Hanley, R Schultz, M Lewis, NE Freed, M Ellis, V Ngauy, ...
Military medicine 171 (5), 357-359, 2006
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