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Michael Brudno
Michael Brudno
Professor of Computer Science, University of Toronto; Chief Data Scientist, UHN
Verified email at cs.toronto.edu
Title
Cited by
Cited by
Year
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, et al (Rat Genome Sequencing Consortium)
Nature 428 (6982), 493-521, 2004
25602004
The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
25382010
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
24382004
Similarity network fusion for aggregating data types on a genomic scale
B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ...
Nature methods 11 (3), 333-337, 2014
19072014
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do, MSP Mahabhashyam, M Brudno, S Batzoglou
Genome research 15 (2), 330-340, 2005
14852005
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, ...
Genome research 13 (4), 721-731, 2003
13782003
VISTA : visualizing global DNA sequence alignments of arbitrary length
C Mayor, M Brudno, JR Schwartz, A Poliakov, EM Rubin, KA Frazer, ...
Bioinformatics 16 (11), 1046-1047, 2000
11732000
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
S Köhler, SC Doelken, CJ Mungall, S Bauer, HV Firth, I Bailleul-Forestier, ...
Nucleic acids research 42 (D1), D966-D974, 2014
9402014
SHRiMP: accurate mapping of short color-space reads
SM Rumble, P Lacroute, AV Dalca, M Fiume, A Sidow, M Brudno
PLoS computational biology 5 (5), e1000386, 2009
7822009
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
S Köhler, L Carmody, N Vasilevsky, JOB Jacobsen, D Danis, JP Gourdine, ...
Nucleic acids research 47 (D1), D1018-D1027, 2019
7202019
Computational methods for discovering structural variation with next-generation sequencing
P Medvedev, M Stanciu, M Brudno
Nature methods 6 (Suppl 11), S13-S20, 2009
6882009
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations
P Buczkowicz, C Hoeman, P Rakopoulos, S Pajovic, L Letourneau, ...
Nature genetics 46 (5), 451-456, 2014
6572014
The human phenotype ontology in 2017
S Köhler, NA Vasilevsky, M Engelstad, E Foster, J McMurry, S Aymé, ...
Nucleic acids research 45 (D1), D865-D876, 2017
6462017
Snowflock: rapid virtual machine cloning for cloud computing
HA Lagar-Cavilla, JA Whitney, AM Scannell, P Patchin, SM Rumble, ...
Proceedings of the 4th ACM European conference on Computer systems, 1-12, 2009
5972009
Glocal alignment: finding rearrangements during alignment
M Brudno, S Malde, A Poliakov, CB Do, O Couronne, I Dubchak, ...
Bioinformatics 19 (suppl 1), i54, 2003
5642003
The Matchmaker Exchange: a platform for rare disease gene discovery
AA Philippakis, DR Azzariti, S Beltran, AJ Brookes, CA Brownstein, ...
Human mutation 36 (10), 915-921, 2015
5162015
SHRiMP2: sensitive yet practical short read mapping
M David, M Dzamba, D Lister, L Ilie, M Brudno
Bioinformatics 27 (7), 1011-1012, 2011
4272011
International cooperation to enable the diagnosis of all rare genetic diseases
KM Boycott, A Rath, JX Chong, T Hartley, FS Alkuraya, G Baynam, ...
The American Journal of Human Genetics 100 (5), 695-705, 2017
4222017
Active conservation of noncoding sequences revealed by three-way species comparisons
I Dubchak, M Brudno, GG Loots, L Pachter, C Mayor, EM Rubin, ...
Genome research 10 (9), 1304-1306, 2000
4132000
Conservation of core gene expression in vertebrate tissues
ET Chan, GT Quon, G Chua, T Babak, M Trochesset, RA Zirngibl, J Aubin, ...
Journal of biology 8, 1-17, 2009
4002009
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