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Handuo Shi
Handuo Shi
Verified email at stanford.edu
Title
Cited by
Cited by
Year
A comprehensive, CRISPR-based functional analysis of essential genes in bacteria
JM Peters, A Colavin, H Shi, TL Czarny, MH Larson, S Wong, JS Hawkins, ...
Cell 165 (6), 1493-1506, 2016
6762016
Disruption of lipid homeostasis in the Gram-negative cell envelope activates a novel cell death pathway
HA Sutterlin, H Shi, KL May, A Miguel, S Khare, KC Huang, TJ Silhavy
Proceedings of the National Academy of Sciences 113 (11), E1565-E1574, 2016
1672016
How to build a bacterial cell: MreB as the foreman of E. coli construction
H Shi, BP Bratton, Z Gitai, KC Huang
Cell 172 (6), 1294-1305, 2018
1612018
Monoclonal antibody targeting the β-barrel assembly machine of Escherichia coli is bactericidal
KM Storek, MR Auerbach, H Shi, NK Garcia, D Sun, NN Nickerson, R Vij, ...
Proceedings of the National Academy of Sciences 115 (14), 3692-3697, 2018
1602018
Quantum cloning machines and the applications
H Fan, YN Wang, L Jing, JD Yue, HD Shi, YL Zhang, LZ Mu
Physics Reports 544 (3), 241-322, 2014
1382014
Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library
T Ursell, TK Lee, D Shiomi, H Shi, C Tropini, RD Monds, A Colavin, ...
BMC biology 15, 1-15, 2017
1222017
Profiling the human intestinal environment under physiological conditions
D Shalon, RN Culver, JA Grembi, J Folz, PV Treit, H Shi, FA Rosenberger, ...
Nature 617 (7961), 581-591, 2023
1092023
Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition
RA Oliveira, KM Ng, MB Correia, V Cabral, H Shi, JL Sonnenburg, ...
Nature microbiology 5 (4), 630-641, 2020
672020
Deep phenotypic mapping of bacterial cytoskeletal mutants reveals physiological robustness to cell size
H Shi, A Colavin, M Bigos, C Tropini, RD Monds, KC Huang
Current Biology 27 (22), 3419-3429. e4, 2017
652017
RodZ modulates geometric localization of the bacterial actin MreB to regulate cell shape
A Colavin, H Shi, KC Huang
Nature communications 9 (1), 1280, 2018
642018
Single-molecule imaging reveals modulation of cell wall synthesis dynamics in live bacterial cells
TK Lee, K Meng, H Shi, KC Huang
Nature communications 7 (1), 13170, 2016
542016
Programming a Pavlovian-like conditioning circuit in Escherichia coli
H Zhang, M Lin, H Shi, W Ji, L Huang, X Zhang, S Shen, R Gao, S Wu, ...
Nature communications 5 (1), 3102, 2014
502014
The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in Escherichia coli
J Grimm, H Shi, W Wang, AM Mitchell, NS Wingreen, KC Huang, ...
Proceedings of the National Academy of Sciences 117 (43), 26907-26914, 2020
442020
Starvation induces shrinkage of the bacterial cytoplasm
H Shi, CS Westfall, J Kao, PD Odermatt, SE Anderson, S Cesar, M Sievert, ...
Proceedings of the National Academy of Sciences 118 (24), e2104686118, 2021
422021
Morphological and transcriptional responses to CRISPRi knockdown of essential genes in Escherichia coli
MR Silvis, M Rajendram, H Shi, H Osadnik, AN Gray, S Cesar, JM Peters, ...
MBio 12 (5), 10.1128/mbio. 02561-21, 2021
372021
Strain Library Imaging Protocol for high-throughput, automated single-cell microscopy of large bacterial collections arrayed on multiwell plates
H Shi, A Colavin, TK Lee, KC Huang
Nature Protocols 12 (2), 429-438, 2017
372017
Environmental and physiological factors affecting high-throughput measurements of bacterial growth
E Atolia, S Cesar, HA Arjes, M Rajendram, H Shi, BD Knapp, S Khare, ...
MBio 11 (5), 10.1128/mbio. 01378-20, 2020
362020
Automated design of genetic toggle switches with predetermined bistability
S Chen, H Zhang, H Shi, W Ji, J Feng, Y Gong, Z Yang, Q Ouyang
ACS synthetic Biology 1 (7), 284-290, 2012
362012
A formalized design process for bacterial consortia that perform logic computing
W Ji, H Shi, H Zhang, R Sun, J Xi, D Wen, J Feng, Y Chen, X Qin, Y Ma, ...
PLoS One 8 (2), e57482, 2013
352013
Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments
H Shi, Y Hu, PD Odermatt, CG Gonzalez, L Zhang, JE Elias, F Chang, ...
Nature communications 12 (1), 1975, 2021
332021
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Articles 1–20