Theo dơi
Aleksei Aksimentiev
Aleksei Aksimentiev
Email được xác minh tại illinois.edu - Trang chủ
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 2020
24282020
Imaging α-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map
A Aksimentiev, K Schulten
Biophysical journal 88 (6), 3745-3761, 2005
8002005
Slowing down DNA translocation through a nanopore in lithium chloride
SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker
Nano letters 12 (2), 1038-1044, 2012
4762012
Microscopic kinetics of DNA translocation through synthetic nanopores
A Aksimentiev, JB Heng, G Timp, K Schulten
Biophysical journal 87 (3), 2086-2097, 2004
4652004
Sizing DNA using a nanometer-diameter pore
JB Heng, C Ho, T Kim, R Timp, A Aksimentiev, YV Grinkova, S Sligar, ...
Biophysical journal 87 (4), 2905-2911, 2004
4452004
Orientation discrimination of single-stranded DNA inside the α-hemolysin membrane channel
J Mathé, A Aksimentiev, DR Nelson, K Schulten, A Meller
Proceedings of the National Academy of Sciences 102 (35), 12377-12382, 2005
4332005
Water− silica force field for simulating nanodevices
ER Cruz-Chu, A Aksimentiev, K Schulten
The Journal of Physical Chemistry B 110 (43), 21497-21508, 2006
4012006
Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore
H Ouldali, K Sarthak, T Ensslen, F Piguet, P Manivet, J Pelta, ...
Nature biotechnology 38 (2), 176-181, 2020
4002020
Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
J Yoo, A Aksimentiev
The journal of physical chemistry letters 3 (1), 45-50, 2012
3532012
Multiple rereads of single proteins at single–amino acid resolution using nanopores
H Brinkerhoff, ASW Kang, J Liu, A Aksimentiev, C Dekker
Science 374 (6574), 1509-1513, 2021
3442021
Assessing graphene nanopores for sequencing DNA
DB Wells, M Belkin, J Comer, A Aksimentiev
Nano letters 12 (8), 4117-4123, 2012
3422012
The emerging landscape of single-molecule protein sequencing technologies
JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard, XF Van Kooten, ...
Nature methods 18 (6), 604-617, 2021
2972021
The electromechanics of DNA in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Biophysical journal 90 (3), 1098-1106, 2006
2812006
Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor
ME Gracheva, A Xiong, A Aksimentiev, K Schulten, G Timp, JP Leburton
Nanotechnology 17 (3), 622, 2006
2642006
Modeling and simulation of ion channels
C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev
Chemical reviews 112 (12), 6250-6284, 2012
2602012
Stretching DNA using the electric field in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Nano letters 5 (10), 1883-1888, 2005
2442005
New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
J Yoo, A Aksimentiev
Physical Chemistry Chemical Physics 20 (13), 8432-8449, 2018
2352018
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability
TTM Ngo, J Yoo, Q Dai, Q Zhang, C He, A Aksimentiev, T Ha
Nature communications 7 (1), 10813, 2016
2242016
Detection of DNA sequences using an alternating electric field in a nanopore capacitor
G Sigalov, J Comer, G Timp, A Aksimentiev
Nano letters 8 (1), 56-63, 2008
2212008
Large-conductance transmembrane porin made from DNA origami
K Göpfrich, CY Li, M Ricci, SP Bhamidimarri, J Yoo, B Gyenes, ...
ACS nano 10 (9), 8207-8214, 2016
2112016
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