| Large-scale profiling reveals the influence of genetic variation on gene expression in human induced pluripotent stem cells C DeBoever, H Li, D Jakubosky, P Benaglio, J Reyna, KM Olson, ... Cell stem cell 20 (4), 533-546. e7, 2017 | 179 | 2017 |
| iPSCORE: a resource of 222 iPSC lines enabling functional characterization of genetic variation across a variety of cell types AD Panopoulos, M D'Antonio, P Benaglio, R Williams, SI Hashem, ... Stem cell reports 8 (4), 1086-1100, 2017 | 178 | 2017 |
| PTEN regulates glioblastoma oncogenesis through chromatin-associated complexes of DAXX and histone H3. 3 JA Benitez, J Ma, M D’Antonio, A Boyer, MF Camargo, C Zanca, S Kelly, ... Nature communications 8 (1), 15223, 2017 | 142 | 2017 |
| Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression WW Greenwald, H Li, P Benaglio, D Jakubosky, H Matsui, A Schmitt, ... Nature communications 10 (1), 1054, 2019 | 137 | 2019 |
| Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants MKR Donovan, A D’Antonio-Chronowska, M D’Antonio, KA Frazer Nature communications 11 (1), 955, 2020 | 134 | 2020 |
| Enhancer release and retargeting activates disease-susceptibility genes S Oh, J Shao, J Mitra, F Xiong, M D’Antonio, R Wang, I Garcia-Bassets, ... Nature 595 (7869), 735-740, 2021 | 100 | 2021 |
| Insights into the mutational burden of human induced pluripotent stem cells from an integrative multi-omics approach M D’Antonio, P Benaglio, D Jakubosky, WW Greenwald, H Matsui, ... Cell reports 24 (4), 883-894, 2018 | 93 | 2018 |
| Properties of structural variants and short tandem repeats associated with gene expression and complex traits D Jakubosky, M D’Antonio, MJ Bonder, C Smail, MKR Donovan, ... Nature communications 11 (1), 2927, 2020 | 88 | 2020 |
| High-throughput and cost-effective characterization of induced pluripotent stem cells M D'Antonio, G Woodruff, JL Nathanson, A D'Antonio-Chronowska, ... Stem cell reports 8 (4), 1101-1111, 2017 | 81 | 2017 |
| Glioblastoma cellular cross-talk converges on NF-κB to attenuate EGFR inhibitor sensitivity C Zanca, GR Villa, JA Benitez, AH Thorne, T Koga, M D'Antonio, ... Genes & development 31 (12), 1212-1227, 2017 | 72 | 2017 |
| Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics MJ Bonder, C Smail, MJ Gloudemans, L Frésard, D Jakubosky, ... Nature genetics 53 (3), 313-321, 2021 | 71* | 2021 |
| NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes O An, V Pendino, M D’Antonio, E Ratti, M Gentilini, FD Ciccarelli Database 2014, bau015, 2014 | 71 | 2014 |
| Modification of gene duplicability during the evolution of protein interaction network M D'Antonio, FD Ciccarelli PLoS computational biology 7 (4), e1002029, 2011 | 63 | 2011 |
| Association of human iPSC gene signatures and X chromosome dosage with two distinct cardiac differentiation trajectories A D'Antonio-Chronowska, MKR Donovan, WWY Greenwald, JP Nguyen, ... Stem cell reports 13 (5), 924-938, 2019 | 57 | 2019 |
| Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells T Koga, IA Chaim, JA Benitez, S Markmiller, AD Parisian, RF Hevner, ... Nature communications 11 (1), 550, 2020 | 55 | 2020 |
| Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes M D'Antonio, V Pendino, S Sinha, FD Ciccarelli Nucleic acids research 40 (D1), D978-D983, 2012 | 53 | 2012 |
| Integrated analysis of recurrent properties of cancer genes to identify novel drivers M D'Antonio, FD Ciccarelli Genome biology 14, 1-17, 2013 | 51 | 2013 |
| Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits P Benaglio, A D’Antonio-Chronowska, W Ma, F Yang, ... Nature genetics 51 (10), 1506-1517, 2019 | 48* | 2019 |
| Kataegis expression signature in breast cancer is associated with late onset, better prognosis, and higher HER2 levels M D’Antonio, P Tamayo, JP Mesirov, KA Frazer Cell reports 16 (3), 672-683, 2016 | 46 | 2016 |
| Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease M D'Antonio, J Reyna, D Jakubosky, MKR Donovan, MJ Bonder, H Matsui, ... Elife 8, e48476, 2019 | 43 | 2019 |
Agnieszka D'Antonio-ChronowskaUniversity of California San DiegoVerified email at health.ucsd.edu
