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Matteo D'Antonio
Matteo D'Antonio
Verified email at ucsd.edu
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Cited by
Year
Large-scale profiling reveals the influence of genetic variation on gene expression in human induced pluripotent stem cells
C DeBoever, H Li, D Jakubosky, P Benaglio, J Reyna, KM Olson, ...
Cell stem cell 20 (4), 533-546. e7, 2017
1742017
iPSCORE: a resource of 222 iPSC lines enabling functional characterization of genetic variation across a variety of cell types
AD Panopoulos, M D'Antonio, P Benaglio, R Williams, SI Hashem, ...
Stem cell reports 8 (4), 1086-1100, 2017
1562017
PTEN regulates glioblastoma oncogenesis through chromatin-associated complexes of DAXX and histone H3. 3
JA Benitez, J Ma, M D’Antonio, A Boyer, MF Camargo, C Zanca, S Kelly, ...
Nature communications 8 (1), 15223, 2017
1292017
Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
WW Greenwald, H Li, P Benaglio, D Jakubosky, H Matsui, A Schmitt, ...
Nature communications 10 (1), 1054, 2019
1252019
Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants
MKR Donovan, A D’Antonio-Chronowska, M D’Antonio, KA Frazer
Nature communications 11 (1), 955, 2020
1202020
Insights into the mutational burden of human induced pluripotent stem cells from an integrative multi-omics approach
M D’Antonio, P Benaglio, D Jakubosky, WW Greenwald, H Matsui, ...
Cell reports 24 (4), 883-894, 2018
862018
Properties of structural variants and short tandem repeats associated with gene expression and complex traits
D Jakubosky, M D’Antonio, MJ Bonder, C Smail, MKR Donovan, ...
Nature communications 11 (1), 2927, 2020
812020
Enhancer release and retargeting activates disease-susceptibility genes
S Oh, J Shao, J Mitra, F Xiong, M D’Antonio, R Wang, I Garcia-Bassets, ...
Nature 595 (7869), 735-740, 2021
782021
High-throughput and cost-effective characterization of induced pluripotent stem cells
M D'Antonio, G Woodruff, JL Nathanson, A D'Antonio-Chronowska, ...
Stem cell reports 8 (4), 1101-1111, 2017
782017
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes
O An, V Pendino, M D’Antonio, E Ratti, M Gentilini, FD Ciccarelli
Database 2014, bau015, 2014
682014
Glioblastoma cellular cross-talk converges on NF-κB to attenuate EGFR inhibitor sensitivity
C Zanca, GR Villa, JA Benitez, AH Thorne, T Koga, M D'Antonio, ...
Genes & development 31 (12), 1212-1227, 2017
652017
Modification of gene duplicability during the evolution of protein interaction network
M D'Antonio, FD Ciccarelli
PLoS computational biology 7 (4), e1002029, 2011
612011
Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics
MJ Bonder, C Smail, MJ Gloudemans, L FrÚsard, D Jakubosky, ...
Nature genetics 53 (3), 313-321, 2021
58*2021
Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells
T Koga, IA Chaim, JA Benitez, S Markmiller, AD Parisian, RF Hevner, ...
Nature communications 11 (1), 550, 2020
522020
Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes
M D'Antonio, V Pendino, S Sinha, FD Ciccarelli
Nucleic acids research 40 (D1), D978-D983, 2012
522012
Association of human iPSC gene signatures and X chromosome dosage with two distinct cardiac differentiation trajectories
A D'Antonio-Chronowska, MKR Donovan, WWY Greenwald, JP Nguyen, ...
Stem cell reports 13 (5), 924-938, 2019
512019
Integrated analysis of recurrent properties of cancer genes to identify novel drivers
M D'Antonio, FD Ciccarelli
Genome biology 14, 1-17, 2013
502013
Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits
P Benaglio, A D’Antonio-Chronowska, W Ma, F Yang, ...
Nature genetics 51 (10), 1506-1517, 2019
41*2019
Kataegis expression signature in breast cancer is associated with late onset, better prognosis, and higher HER2 levels
M D’Antonio, P Tamayo, JP Mesirov, KA Frazer
Cell reports 16 (3), 672-683, 2016
402016
Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes
AS Syed, M D'Antonio, FD Ciccarelli
Nucleic Acids Research 38 (suppl_1), D670-D675, 2010
392010
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Articles 1–20