| From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria E Lerat, V Daubin, NA Moran PLoS biology 1 (1), e19, 2003 | 525 | 2003 |
| Evolutionary origins of genomic repertoires in bacteria E Lerat, V Daubin, H Ochman, NA Moran PLoS biology 3 (5), e130, 2005 | 405 | 2005 |
| Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs E Lerat Heredity 104 (6), 520-533, 2010 | 284 | 2010 |
| Examining bacterial species under the specter of gene transfer and exchange H Ochman, E Lerat, V Daubin Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005 | 275 | 2005 |
| The evolutionary history of quorum-sensing systems in bacteria E Lerat, NA Moran Molecular biology and evolution 21 (5), 903-913, 2004 | 248 | 2004 |
| The source of laterally transferred genes in bacterial genomes V Daubin, E Lerat, G Perrière Genome biology 4, 1-12, 2003 | 229 | 2003 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022 | 226 | 2022 |
| Recognizing the pseudogenes in bacterial genomes E Lerat, H Ochman Nucleic acids research 33 (10), 3125-3132, 2005 | 200 | 2005 |
| How genomics can help biodiversity conservation K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ... Trends in Genetics 39 (7), 545-559, 2023 | 179 | 2023 |
| “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files M Bailly-Bechet, A Haudry, E Lerat Mobile DNA 5, 1-15, 2014 | 155 | 2014 |
| Ψ-Φ: Exploring the outer limits of bacterial pseudogenes E Lerat, H Ochman Genome research 14 (11), 2273-2278, 2004 | 122 | 2004 |
| TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes E Lerat, M Fablet, L Modolo, H Lopez-Maestre, C Vieira Nucleic acids research 45 (4), e17-e17, 2017 | 119 | 2017 |
| An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat Genes 11 (9), 1046, 2020 | 103 | 2020 |
| A call for benchmarking transposable element annotation methods DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ... Mobile DNA 6, 1-9, 2015 | 100 | 2015 |
| Sequence divergence within transposable element families in the Drosophila melanogaster genome E Lerat, C Rizzon, C Biémont Genome research 13 (8), 1889-1896, 2003 | 100 | 2003 |
| Retrotransposons and retroviruses: analysis of the envelope gene. E Lerat, P Capy Molecular biology and evolution 16 (9), 1198-1207, 1999 | 92 | 1999 |
| UrQt: an efficient software for the Unsupervised Quality trimming of NGS data L Modolo, E Lerat BMC bioinformatics 16, 1-8, 2015 | 73 | 2015 |
| Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes E Lerat, N Burlet, C Biémont, C Vieira Gene 473 (2), 100-109, 2011 | 65 | 2011 |
| Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans N Parisot, A Pelin, C Gasc, V Polonais, A Belkorchia, J Panek, H El Alaoui, ... Genome Biology and Evolution 6 (9), 2289-2300, 2014 | 52 | 2014 |
| Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations E Lerat, C Goubert, S Guirao‐Rico, M Merenciano, AB Dufour, C Vieira, ... Molecular ecology 28 (6), 1506-1522, 2019 | 49 | 2019 |
Cristina VieiraUniversity Lyon 1Verified email at univ-lyon1.fr
