| MONI: A Pangenomic Index for Finding Maximal Exact Matches M Rossi, M Oliva, B Langmead, T Gagie, C Boucher Journal of Computational Biology 29 (2), 169-187, 2022 | 66 | 2022 |
| Portable nanopore analytics: are we there yet? M Oliva, F Milicchio, K King, G Benson, C Boucher, M Prosperi Bioinformatics 36 (16), 4399-4405, 2020 | 22 | 2020 |
| Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes IB Slizovskiy, M Oliva, JK Settle, LV Zyskina, M Prosperi, C Boucher, ... Microbiome 10 (1), 185, 2022 | 13 | 2022 |
| AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data S Marini, M Oliva, IB Slizovskiy, RA Das, NR Noyes, T Kahveci, C Boucher, ... GigaScience 11, giac029, 2022 | 11 | 2022 |
| Finding Maximal Exact Matches Using the r-Index M Rossi, M Oliva, P Bonizzoni, B Langmead, T Gagie, C Boucher Journal of Computational Biology 29 (2), 188-194, 2022 | 10 | 2022 |
| MONI: A pangenomics index for finding MEMs M Rossi, M Oliva, B Langmead, T Gagie, C Boucher | 10 | 2021 |
| Third-generation sequencing data analytics on mobile devices: cache oblivious and out-of-core approaches as a proof-of-concept F Milicchio, M Oliva, C Boucher, M Prosperi Procedia computer science 134, 219-226, 2018 | 10 | 2018 |
| Recursive Prefix-Free Parsing for Building Big BWTs M Oliva, T Gagie, C Boucher 2023 Data Compression Conference (DCC), 62-70, 2023 | 8 | 2023 |
| Efficiently Merging r-indexes M Oliva, M Rossi, J Sirén, G Manzini, T Kahveci, T Gagie, C Boucher 2021 Data Compression Conference (DCC), 203-212, 2021 | 6 | 2021 |
| CSTs for Terabyte-Sized Data M Oliva, D Cenzato, M Rossi, Z Lipták, T Gagie, C Boucher 2022 Data Compression Conference (DCC), 93-102, 2022 | 5 | 2022 |
| Exploring prediction of antimicrobial resistance based on protein solvent accessibility variation S Marini, M Oliva, IB Slizovskiy, NR Noyes, C Boucher, M Prosperi Frontiers in genetics 12, 564186, 2021 | 2 | 2021 |
| Acceleration of FM-index Queries Through Prefix-free Parsing A Hong, M Oliva, D Köppl, H Bannai, C Boucher, T Gagie arXiv preprint arXiv:2305.05893, 2023 | 1 | 2023 |
| An interleaved hardware-accelerated k-mer parser F Milicchio, M Oliva, M Prosperi 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 1 | 2022 |
| Building a Pangenome Alignment Index via Recursive Prefix-Free Parsing M Oliva, T Gagie, C Boucher bioRxiv, 2023.01. 26.525723, 2023 | | 2023 |
| Finding MEMs with the RLBWT C Boucher, T Gagie, M Oliva, M Rossi | | |
