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Automated phylogenetic detection of recombination using a genetic algorithm
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Molecular biology and evolution 23 (10), 1891-1901, 2006
GARD: a genetic algorithm for recombination detection
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Bioinformatics 22 (24), 3096-3098, 2006
Highly precise measurement of HIV DNA by droplet digital PCR
MC Strain, SM Lada, T Luong, SE Rought, S Gianella, VH Terry, CA Spina, ...
PloS one 8 (4), e55943, 2013
An in-depth comparison of latent HIV-1 reactivation in multiple cell model systems and resting CD4+ T cells from aviremic patients
CA Spina, J Anderson, NM Archin, A Bosque, J Chan, M Famiglietti, ...
PLoS pathogens 9 (12), e1003834, 2013
Hollow porous particles in metered dose inhalers
LA Dellamary, TE Tarara, DJ Smith, CH Woelk, A Adractas, ML Costello, ...
Pharmaceutical research 17 (2), 168-174, 2000
A deep learning genome-mining strategy for biosynthetic gene cluster prediction
GD Hannigan, D Prihoda, A Palicka, J Soukup, O Klempir, L Rampula, ...
Nucleic acids research 47 (18), e110-e110, 2019
Genetic constraints and the adaptive evolution of rabies virus in nature
EC Holmes, CH Woelk, R Kassis, H Bourhy
Virology 292 (2), 247-257, 2002
Gene networks specific for innate immunity define post-traumatic stress disorder
MS Breen, AX Maihofer, SJ Glatt, DS Tylee, SD Chandler, MT Tsuang, ...
Molecular psychiatry 20 (12), 1538-1545, 2015
Phylogenetic evidence for adaptive evolution of dengue viruses in nature
SS Twiddy, CH Woelk, EC Holmes
Journal of General Virology 83 (7), 1679-1689, 2002
Reduced positive selection in vector-borne RNA viruses
CH Woelk, EC Holmes
Molecular biology and evolution 19 (12), 2333-2336, 2002
Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes
M Choisy, CH Woelk, JF Guégan, DL Robertson
Journal of virology 78 (4), 1962-1970, 2004
PTSD blood transcriptome mega-analysis: shared inflammatory pathways across biological sex and modes of trauma
MS Breen, DS Tylee, AX Maihofer, TC Neylan, D Mehta, EB Binder, ...
Neuropsychopharmacology 43 (3), 469-481, 2018
Induction of fibroblast senescence generates a non-fibrogenic myofibroblast phenotype that differentially impacts on cancer prognosis
M Mellone, CJ Hanley, S Thirdborough, T Mellows, E Garcia, J Woo, ...
Aging (Albany NY) 9 (1), 114, 2017
Positively charged amino acid substitutions in the E2 envelope glycoprotein are associated with the emergence of Venezuelan equine encephalitis virus
AC Brault, AM Powers, EC Holmes, CH Woelk, SC Weaver
Journal of virology 76 (4), 1718-1730, 2002
A public health model for the molecular surveillance of HIV transmission in San Diego, California
DM Smith, SJ May, S Tweeten, L Drumright, ME Pacold, SLK Pond, ...
Aids 23 (2), 225-232, 2009
Gene expression analysis of TIL rich HPV-driven head and neck tumors reveals a distinct B-cell signature when compared to HPV independent tumors
O Wood, J Woo, G Seumois, N Savelyeva, KJ McCann, D Singh, T Jones, ...
Oncotarget 7 (35), 56781, 2016
Multitissue transcriptomics delineates the diversity of airway T cell functions in asthma
A Singhania, JC Wallington, CG Smith, D Horowitz, KJ Staples, ...
American journal of respiratory cell and molecular biology 58 (2), 261-270, 2018
Microarray truths and consequences
R Sasik, CH Woelk, J Corbeil
Journal of molecular endocrinology 33 (1), 1-9, 2004
Upregulated Glucose Metabolism Correlates Inversely with CD8+ T-cell Infiltration and Survival in Squamous Cell Carcinoma
CH Ottensmeier, KL Perry, EL Harden, J Stasakova, V Jenei, J Fleming, ...
Cancer research 76 (14), 4136-4148, 2016
The effect of cell subset isolation method on gene expression in leukocytes
N Beliakova‐Bethell, M Massanella, C White, SM Lada, P Du, F Vaida, ...
Cytometry Part A 85 (1), 94-104, 2014
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