John H. Maddocks
John H. Maddocks
Professor of Mathematics, EPFL
Verified email at - Homepage
Cited by
Cited by
Conformational analysis of nucleic acids revisited: Curves+
R Lavery, M Moakher, JH Maddocks, D Petkeviciute, K Zakrzewska
Nucleic acids research 37 (17), 5917-5929, 2009
On the kinematics of wheeled mobile robots
JC Alexander, JH Maddocks
The International Journal of Robotics Research 8 (5), 15-27, 1989
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
R Lavery, K Zakrzewska, D Beveridge, TC Bishop, DA Case, ...
Nucleic acids research 38 (1), 299-313, 2010
Global curvature, thickness, and the ideal shapes of knots
O Gonzalez, JH Maddocks
Proceedings of the National Academy of Sciences 96 (9), 4769-4773, 1999
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d (CpG) steps
DL Beveridge, G Barreiro, KS Byun, DA Case, TE Cheatham, SB Dixit, ...
Biophysical journal 87 (6), 3799-3813, 2004
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique …
SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, ...
Biophysical journal 89 (6), 3721-3740, 2005
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ...
Nucleic acids research 42 (19), 12272-12283, 2014
A continuum rod model of sequence‐dependent DNA structure
RS Manning, JH Maddocks, JD Kahn
The Journal of chemical physics 105 (13), 5626-5646, 1996
N Chouaieb, A Goriely, JH Maddocks
Proceedings of the National Academy of Sciences 103 (25), 9398-9403, 2006
Kinking occurs during molecular dynamics simulations of small DNA minicircles
F Lankaš, R Lavery, JH Maddocks
Structure 14 (10), 1527-1534, 2006
Stability of nonlinearly elastic rods
JH Maddocks
Archive for rational mechanics and analysis 85 (4), 311-354, 1984
On the stability of KdV multi solitons
JH Maddocks, RL Sachs
Communications on pure and applied mathematics 46 (6), 867-901, 1993
Global curvature and self-contact of nonlinearly elastic curves and rods
O Gonzalez, JH Maddocks, F Schuricht, H Mosel
Calculus of Variations and Partial Differential Equations 14, 29-68, 2002
Stability and folds
JH Maddocks
Archive for Rational mechanics and Analysis 99, 301-328, 1987
Hamiltonian dynamics of a rigid body in a central gravitational field
LS Wang, PS Krishnaprasad, JH Maddocks
Celestial Mechanics and Dynamical Astronomy 50 (4), 349-386, 1990
Second-order comparison of Gaussian random functions and the geometry of DNA minicircles
VM Panaretos, D Kraus, JH Maddocks
Journal of the American Statistical Association 105 (490), 670-682, 2010
Sequence-dependent persistence lengths of DNA
JS Mitchell, J Glowacki, AE Grandchamp, RS Manning, JH Maddocks
Journal of chemical theory and computation 13 (4), 1539-1555, 2017
Analyzing ion distributions around DNA
R Lavery, JH Maddocks, M Pasi, K Zakrzewska
Nucleic acids research 42 (12), 8138-8149, 2014
Hamiltonian formulations and symmetries in rod mechanics
DJ Dichmann, Y Li, JH Maddocks
Mathematical approaches to biomolecular structure and dynamics, 71-113, 1996
Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics
M Pasi, JH Maddocks, R Lavery
Nucleic acids research 43 (4), 2412-2423, 2015
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