| Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis S Quainoo, JPM Coolen, SAFT van Hijum, MA Huynen, WJG Melchers, ... Clinical microbiology reviews 30 (4), 1015-1063, 2017 | 475 | 2017 |
| Microbial biogeography of drinking water: patterns in phylogenetic diversity across space and time G Roeselers, J Coolen, PWJJ van der Wielen, MC Jaspers, A Atsma, ... Environmental microbiology 17 (7), 2505-2514, 2015 | 92 | 2015 |
| Risk assessment after a severe hospital-acquired infection associated with carbapenemase-producing Pseudomonas aeruginosa J Hopman, C Meijer, N Kenters, JPM Coolen, MR Ghamati, S Mehtar, ... JAMA network open 2 (2), e187665-e187665, 2019 | 59 | 2019 |
| Gene co-expression analysis identifies gene clusters associated with isotropic and polarized growth in Aspergillus fumigatus conidia TJH Baltussen, JPM Coolen, J Zoll, PE Verweij, WJG Melchers Fungal genetics and biology 116, 62-72, 2018 | 46 | 2018 |
| Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole MWJ Hokken, J Zoll, JPM Coolen, BJ Zwaan, PE Verweij, WJG Melchers BMC genomics 20, 1-17, 2019 | 38 | 2019 |
| SARS-CoV-2 whole-genome sequencing using reverse complement PCR: For easy, fast and accurate outbreak and variant analysis. JPM Coolen, F Wolters, A Tostmann, LFJ van Groningen, ... Journal of Clinical Virology 144, 104993, 2021 | 27 | 2021 |
| Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit AJH Cremers, JPM Coolen, CP Bleeker-Rovers, ... Scientific reports 10 (1), 2619, 2020 | 19 | 2020 |
| Development of an algorithm to discriminate between plasmid- and chromosomal-mediated AmpC β-lactamase production in Escherichia coli by elaborate … JPM Coolen, EPM Den Drijver, JAJW Kluytmans, JJ Verweij, BA Lamberts, ... Journal of Antimicrobial Chemotherapy 74 (12), 3481-3488, 2019 | 19 | 2019 |
| RNA sequencing elucidates drug-specific mechanisms of antibiotic tolerance and resistance in Mycobacterium abscessus JA Schildkraut, JPM Coolen, S Burbaud, JJN Sangen, MP Kwint, RA Floto, ... Antimicrobial Agents and Chemotherapy 66 (1), e01509-21, 2022 | 18 | 2022 |
| External quality assessment of SARS-CoV-2 sequencing: an ESGMD-SSM pilot trial across 15 European laboratories F Wegner, T Roloff, M Huber, S Cordey, A Ramette, Y Gerth, C Bertelli, ... Journal of clinical microbiology 60 (1), e01698-21, 2022 | 17 | 2022 |
| A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology SL van Esveld, L Meerstein‐Kessel, C Boshoven, JF Baaij, K Barylyuk, ... Msphere 6 (5), 10.1128/msphere. 00614-21, 2021 | 15 | 2021 |
| Failure with acquired resistance of an optimised bedaquiline-based treatment regimen for pulmonary Mycobacterium avium complex disease SMH Zweijpfenning, JA Schildkraut, JPM Coolen, C Ruesen, E Koenraad, ... European Respiratory Journal 54 (1), 2019 | 13 | 2019 |
| Centre-specific bacterial pathogen typing affects infection-control decision making JPM Coolen, C Jamin, PHM Savelkoul, JWA Rossen, HFL Wertheim, ... Microbial Genomics 7 (8), 000612, 2021 | 12 | 2021 |
| Genome-wide analysis in Escherichia coli unravels a high level of genetic homoplasy associated with cefotaxime resistance JPM Coolen, EPM den Drijver, JJ Verweij, JA Schildkraut, K Neveling, ... Microbial genomics 7 (4), 000556, 2021 | 9 | 2021 |
| Nosocomial outbreak of multi-resistant Streptococcus pneumoniae serotype 15A in a centre for chronic pulmonary diseases GJH Bastiaens, AJH Cremers, JPM Coolen, MT Nillesen, MJ Boeree, ... Antimicrobial Resistance & Infection Control 7, 1-4, 2018 | 9 | 2018 |
| The C2H2 transcription factor SltA is required for germination and hyphal development in Aspergillus fumigatus TJH Baltussen, N van Rhijn, JPM Coolen, J Dijksterhuis, PE Verweij, ... Msphere 8 (4), e00076-23, 2023 | 8 | 2023 |
| Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177 JPM Coolen, A Sjödin, B Maraha, GF Hajer, M Forsman, E Verspui, ... Standards in Genomic Sciences 8, 539-547, 2013 | 8 | 2013 |
| Randomized clinical trial: long-term Staphylococcus aureus decolonization in patients on home parenteral nutrition M Gompelman, GTJ Wezendonk, Y Wouters, J Beurskens-Meijerink, ... Clinical Nutrition 42 (5), 706-716, 2023 | 6 | 2023 |
| Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics TJH Baltussen, JPM Coolen, PE Verweij, J Dijksterhuis, WJG Melchers Journal of Fungi 7 (4), 270, 2021 | 6 | 2021 |
| Targeting the 16S rRNA gene by reverse complement PCR next-generation sequencing: specific and sensitive detection and identification of microbes directly in clinical samples SJ Moorlag, JPM Coolen, B van den Bosch, EHM Jin, JB Buil, ... Microbiology Spectrum 11 (3), e04483-22, 2023 | 4 | 2023 |
