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Jordy P.M. Coolen
Jordy P.M. Coolen
Radboudumc, The Netherlands
Verified email at radboudumc.nl - Homepage
Title
Cited by
Cited by
Year
Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis
S Quainoo, JPM Coolen, SAFT van Hijum, MA Huynen, WJG Melchers, ...
Clinical microbiology reviews 30 (4), 1015-1063, 2017
4112017
Microbial biogeography of drinking water: patterns in phylogenetic diversity across space and time
G Roeselers, J Coolen, PWJJ van der Wielen, MC Jaspers, A Atsma, ...
Environmental microbiology 17 (7), 2505-2514, 2015
882015
Risk assessment after a severe hospital-acquired infection associated with carbapenemase-producing Pseudomonas aeruginosa
J Hopman, C Meijer, N Kenters, JPM Coolen, MR Ghamati, S Mehtar, ...
JAMA network open 2 (2), e187665-e187665, 2019
572019
Gene co-expression analysis identifies gene clusters associated with isotropic and polarized growth in Aspergillus fumigatus conidia
TJH Baltussen, JPM Coolen, J Zoll, PE Verweij, WJG Melchers
Fungal genetics and biology 116, 62-72, 2018
382018
Phenotypic plasticity and the evolution of azole resistance in Aspergillus fumigatus; an expression profile of clinical isolates upon exposure to itraconazole
MWJ Hokken, J Zoll, JPM Coolen, BJ Zwaan, PE Verweij, WJG Melchers
BMC genomics 20 (1), 1-17, 2019
332019
SARS-CoV-2 whole-genome sequencing using reverse complement PCR: For easy, fast and accurate outbreak and variant analysis.
JPM Coolen, F Wolters, A Tostmann, LFJ van Groningen, ...
Journal of Clinical Virology 144, 104993, 2021
232021
Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit
AJH Cremers, JPM Coolen, CP Bleeker-Rovers, ...
Scientific reports 10 (1), 2619, 2020
182020
External quality assessment of SARS-CoV-2 sequencing: an ESGMD-SSM pilot trial across 15 European laboratories
F Wegner, T Roloff, M Huber, S Cordey, A Ramette, Y Gerth, C Bertelli, ...
Journal of clinical microbiology 60 (1), e01698-21, 2022
152022
Development of an algorithm to discriminate between plasmid- and chromosomal-mediated AmpC β-lactamase production in Escherichia coli by elaborate …
JPM Coolen, EPM Den Drijver, JAJW Kluytmans, JJ Verweij, BA Lamberts, ...
Journal of Antimicrobial Chemotherapy 74 (12), 3481-3488, 2019
142019
Failure with acquired resistance of an optimised bedaquiline-based treatment regimen for pulmonary Mycobacterium avium complex disease
SMH Zweijpfenning, JA Schildkraut, JPM Coolen, C Ruesen, E Koenraad, ...
European Respiratory Journal 54 (1), 2019
132019
RNA sequencing elucidates drug-specific mechanisms of antibiotic tolerance and resistance in Mycobacterium abscessus
JA Schildkraut, JPM Coolen, S Burbaud, JJN Sangen, MP Kwint, RA Floto, ...
Antimicrobial Agents and Chemotherapy 66 (1), e01509-21, 2022
122022
A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology
SL van Esveld, L Meerstein‐Kessel, C Boshoven, JF Baaij, K Barylyuk, ...
Msphere 6 (5), e00614-21, 2021
102021
Centre-specific bacterial pathogen typing affects infection-control decision making
JPM Coolen, C Jamin, PHM Savelkoul, JWA Rossen, HFL Wertheim, ...
Microbial Genomics 7 (8), 000612, 2021
92021
Nosocomial outbreak of multi-resistant Streptococcus pneumoniae serotype 15A in a centre for chronic pulmonary diseases
GJH Bastiaens, AJH Cremers, JPM Coolen, MT Nillesen, MJ Boeree, ...
Antimicrobial Resistance & Infection Control 7 (1), 1-4, 2018
92018
Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177
JPM Coolen, A Sjödin, B Maraha, GF Hajer, M Forsman, E Verspui, ...
Standards in Genomic Sciences 8, 539-547, 2013
82013
Genome-wide analysis in Escherichia coli unravels a high level of genetic homoplasy associated with cefotaxime resistance
JPM Coolen, EPM den Drijver, JJ Verweij, JA Schildkraut, K Neveling, ...
Microbial Genomics 7 (4), 2021
72021
Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics
TJH Baltussen, JPM Coolen, PE Verweij, J Dijksterhuis, WJG Melchers
Journal of Fungi 7 (4), 270, 2021
52021
A prioritized and validated resource of mitochondrial proteins in Plasmodium identifies leads to unique biology
SL van Esveld, L Meerstein-Kessel, C Boshoven, JF Baaij, K Barylyuk, ...
bioRxiv, 2021.01. 22.427784, 2021
52021
Targeting the 16S rRNA Gene by Reverse Complement PCR Next-Generation Sequencing: Specific and Sensitive Detection and Identification of Microbes Directly in Clinical Samples
SJ Moorlag, JPM Coolen, B van den Bosch, EHM Jin, JB Buil, ...
Microbiology Spectrum 11 (3), e04483-22, 2023
32023
Randomized clinical trial: Long-term Staphylococcus aureus decolonization in patients on home parenteral nutrition
M Gompelman, GTJ Wezendonk, Y Wouters, J Beurskens-Meijerink, ...
Clinical Nutrition 42 (5), 706-716, 2023
32023
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