Computational modeling of synthetic microbial biofilms TJ Rudge, PJ Steiner, A Phillips, J Haseloff ACS synthetic biology 1 (8), 345-352, 2012 | 203 | 2012 |
Cell polarity-driven instability generates self-organized, fractal patterning of cell layers TJ Rudge, F Federici, PJ Steiner, A Kan, J Haseloff ACS synthetic biology 2 (12), 705-714, 2013 | 122 | 2013 |
A system for modelling cell–cell interactions during plant morphogenesis L Dupuy, J Mackenzie, T Rudge, J Haseloff Annals of botany 101 (8), 1255-1265, 2008 | 116 | 2008 |
Orthogonal intercellular signaling for programmed spatial behavior PK Grant, N Dalchau, JR Brown, F Federici, TJ Rudge, B Yordanov, ... Molecular systems biology 12 (1), 849, 2016 | 86 | 2016 |
Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering I Nuñez, T Matute, R Herrera, J Keymer, T Marzullo, T Rudge, F Federici PloS one 12 (11), e0187163, 2017 | 83 | 2017 |
A computational model of cellular morphogenesis in plants T Rudge, J Haseloff European Conference on Artificial Life, 78-87, 2005 | 73 | 2005 |
Characterization of intrinsic properties of promoters TJ Rudge, JR Brown, F Federici, N Dalchau, A Phillips, JW Ajioka, ... ACS synthetic biology 5 (1), 89-98, 2016 | 64 | 2016 |
Full-wavelet approach for fluorescence diffuse optical tomography with structured illumination N Ducros, C D’andrea, G Valentini, T Rudge, S Arridge, A Bassi Optics letters 35 (21), 3676-3678, 2010 | 53 | 2010 |
Fast image reconstruction in fluoresence optical tomography using data compression TJ Rudge, VY Soloviev, SR Arridge Optics letters 35 (5), 763-765, 2010 | 38 | 2010 |
Artificial symmetry-breaking for morphogenetic engineering bacterial colonies IN Nuñez, TF Matute, ID Del Valle, A Kan, A Choksi, D Endy, J Haseloff, ... ACS synthetic biology 6 (2), 256-265, 2017 | 34 | 2017 |
Intercellular adhesion promotes clonal mixing in growing bacterial populations A Kan, I Del Valle, T Rudge, F Federici, J Haseloff Journal of The Royal Society Interface 15 (146), 20180406, 2018 | 28 | 2018 |
Wavelet-based data and solution compression for efficient image reconstruction in fluorescence diffuse optical tomography T Correia, T Rudge, M Koch, V Ntziachristos, S Arridge Journal of Biomedical Optics 18 (8), 086008-086008, 2013 | 21 | 2013 |
Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation T Rudge, K Burrage Bulletin of mathematical biology 70, 971-991, 2008 | 18 | 2008 |
Flapjack: Data management and analysis for genetic circuit characterization G Yanez Feliu, B Earle Gomez, V Codoceo Berrocal, M Munoz Silva, ... ACS Synthetic Biology 10 (1), 183-191, 2020 | 16 | 2020 |
Synthetic Biology: opportunities for Chilean bioindustry and education F Federici, TJ Rudge, B Pollak, J Haseloff, RA Gutiérrez Biological research 46 (4), 383-393, 2013 | 13 | 2013 |
Chapter 18 Evolving Gene Regulatory Networks for Cellular Morphogenesis T Rudge, N Geard Recent Advances in Artificial Life, 239-252, 2005 | 11 | 2005 |
Accurate characterization of dynamic microbial gene expression and growth rate profiles G Vidal, C Vitalis, M Muñoz Silva, C Castillo-Passi, G Yáñez Feliú, ... Synthetic Biology 7 (1), ysac020, 2022 | 7 | 2022 |
Novel tunable spatio-temporal patterns from a simple genetic oscillator circuit G Yáñez Feliú, G Vidal, M Muñoz Silva, TJ Rudge Frontiers in Bioengineering and Biotechnology 8, 893, 2020 | 7 | 2020 |
LOICA: Integrating models with data for genetic network design automation G Vidal, C Vitalis, TJ Rudge ACS Synthetic Biology 11 (5), 1984-1990, 2022 | 6 | 2022 |
Phage predation accelerates the spread of plasmid-encoded antibiotic resistance C Ruan, J Ramoneda, A Kan, TJ Rudge, G Wang, DR Johnson Nature Communications 15 (1), 5397, 2024 | 5 | 2024 |