| Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data C Everaert, M Luypaert, JLV Maag, QX Cheng, ME Dinger, J Hellemans, ... Scientific reports 7 (1), 1559, 2017 | 241 | 2017 |
| Long noncoding RNA expression profiling in cancer: challenges and opportunities L Lorenzi, F Avila Cobos, A Decock, C Everaert, H Helsmoortel, S Lefever, ... Genes, Chromosomes and Cancer 58 (4), 191-199, 2019 | 110 | 2019 |
| Combined analysis of metabolomes, proteomes, and transcriptomes of hepatitis C virus–infected cells and liver to identify pathways associated with disease development J Lupberger, T Croonenborghs, AAR Suarez, N Van Renne, F Jühling, ... Gastroenterology 157 (2), 537-551. e9, 2019 | 73 | 2019 |
| The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35 PY Liu, AE Tee, G Milazzo, KM Hannan, J Maag, S Mondal, B Atmadibrata, ... Nature communications 10 (1), 5026, 2019 | 61 | 2019 |
| The transcriptome of lung tumor-infiltrating dendritic cells reveals a tumor-supporting phenotype and a microRNA signature with negative impact on clinical outcome L Pyfferoen, E Brabants, C Everaert, N De Cabooter, K Heyns, ... Oncoimmunology 6 (1), e1253655, 2017 | 59 | 2017 |
| Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles C Everaert, H Helsmoortel, A Decock, E Hulstaert, R Van Paemel, ... Scientific reports 9 (1), 1-16, 2019 | 51 | 2019 |
| SMARTer single cell total RNA sequencing K Verboom, C Everaert, N Bolduc, KJ Livak, N Yigit, D Rombaut, ... Nucleic acids research 47 (16), e93-e93, 2019 | 48 | 2019 |
| Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data AT Assefa, K De Paepe, C Everaert, P Mestdagh, O Thas, ... Genome biology 19 (1), 1-16, 2018 | 46 | 2018 |
| Detecting long non-coding RNA biomarkers in prostate cancer liquid biopsies: Hype or hope? H Helsmoortel, C Everaert, N Lumen, P Ost, J Vandesompele Non-coding RNA Research 3 (2), 64-74, 2018 | 32 | 2018 |
| Integrative analysis identifies lincRNAs up-and downstream of neuroblastoma driver genes D Rombaut, HS Chiu, B Decaesteker, C Everaert, N Yigit, A Peltier, ... Scientific reports 9 (1), 5685, 2019 | 17 | 2019 |
| Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples A Van Goethem, N Yigit, C Everaert, M Moreno-Smith, LM Mus, E Barbieri, ... Scientific Reports 6 (1), 1-11, 2016 | 17 | 2016 |
| Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data. Sci. Rep. 7: 1559 C Everaert, M Luypaert, JLV Maag, QX Cheng, ME Dinger, J Hellemans, ... | 9 | 2017 |
| Zipper plot: visualizing transcriptional activity of genomic regions F Avila Cobos, J Anckaert, PJ Volders, C Everaert, D Rombaut, ... BMC bioinformatics 18 (1), 1-9, 2017 | 8 | 2017 |
| Imaging-AMARETTO: an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ... JCO clinical cancer informatics 4, 421-435, 2020 | 7 | 2020 |
| Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls E Hulstaert, A Decock, A Morlion, C Everaert, K Verniers, J Nuytens, ... STAR protocols 2 (2), 100475, 2021 | 6 | 2021 |
| Custom long non-coding RNA capture enhances detection sensitivity in different human sample types A Morlion, C Everaert, J Nuytens, E Hulstaert, J Vandesompele, ... RNA biology 18 (sup1), 215-222, 2021 | 5 | 2021 |
| Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study ExRNAQC Consortium, J Anckaert, F Avila Cobos, A Decock, ... bioRxiv, 2021.05. 11.442610, 2021 | 5 | 2021 |
| SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups C Everaert, PJ Volders, A Morlion, O Thas, P Mestdagh BMC bioinformatics 21, 1-8, 2020 | 4 | 2020 |
| TFutils: Data structures for transcription factor bioinformatics BJ Stubbs, S Gopaulakrishnan, K Glass, N Pochet, C Everaert, B Raby, ... F1000Research 8, 2019 | 3 | 2019 |
| Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation A Van Goethem, J Deleu, N Yigit, C Everaert, M Moreno-Smith, ... NAR Cancer 5 (1), zcad002, 2023 | 1 | 2023 |
