Celine Everaert
Celine Everaert
PhD student Universiteit Gent
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Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data
C Everaert, M Luypaert, JLV Maag, QX Cheng, ME Dinger, J Hellemans, ...
Scientific reports 7 (1), 1559, 2017
Long noncoding RNA expression profiling in cancer: challenges and opportunities
L Lorenzi, F Avila Cobos, A Decock, C Everaert, H Helsmoortel, S Lefever, ...
Genes, Chromosomes and Cancer 58 (4), 191-199, 2019
Combined analysis of metabolomes, proteomes, and transcriptomes of hepatitis C virus–infected cells and liver to identify pathways associated with disease development
J Lupberger, T Croonenborghs, AAR Suarez, N Van Renne, F Jühling, ...
Gastroenterology 157 (2), 537-551. e9, 2019
The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35
PY Liu, AE Tee, G Milazzo, KM Hannan, J Maag, S Mondal, B Atmadibrata, ...
Nature communications 10 (1), 5026, 2019
The transcriptome of lung tumor-infiltrating dendritic cells reveals a tumor-supporting phenotype and a microRNA signature with negative impact on clinical outcome
L Pyfferoen, E Brabants, C Everaert, N De Cabooter, K Heyns, ...
Oncoimmunology 6 (1), e1253655, 2017
Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
C Everaert, H Helsmoortel, A Decock, E Hulstaert, R Van Paemel, ...
Scientific reports 9 (1), 17574, 2019
SMARTer single cell total RNA sequencing
K Verboom, C Everaert, N Bolduc, KJ Livak, N Yigit, D Rombaut, ...
Nucleic acids research 47 (16), e93-e93, 2019
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data
AT Assefa, K De Paepe, C Everaert, P Mestdagh, O Thas, ...
Genome biology 19, 1-16, 2018
Detecting long non-coding RNA biomarkers in prostate cancer liquid biopsies: Hype or hope?
H Helsmoortel, C Everaert, N Lumen, P Ost, J Vandesompele
Non-coding RNA Research 3 (2), 64-74, 2018
Integrative analysis identifies lincRNAs up-and downstream of neuroblastoma driver genes
D Rombaut, HS Chiu, B Decaesteker, C Everaert, N Yigit, A Peltier, ...
Scientific reports 9 (1), 5685, 2019
Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples
A Van Goethem, N Yigit, C Everaert, M Moreno-Smith, LM Mus, E Barbieri, ...
Scientific Reports 6 (1), 37876, 2016
Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls
E Hulstaert, A Decock, A Morlion, C Everaert, K Verniers, J Nuytens, ...
STAR protocols 2 (2), 100475, 2021
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
ExRNAQC Consortium, J Anckaert, F Avila Cobos, A Decock, ...
BioRxiv, 2021.05. 11.442610, 2021
Imaging-AMARETTO: an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes
O Gevaert, M Nabian, S Bakr, C Everaert, J Shinde, A Manukyan, ...
JCO clinical cancer informatics 4, 421-435, 2020
Zipper plot: visualizing transcriptional activity of genomic regions
F Avila Cobos, J Anckaert, PJ Volders, C Everaert, D Rombaut, ...
BMC bioinformatics 18, 1-9, 2017
SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups
C Everaert, PJ Volders, A Morlion, O Thas, P Mestdagh
BMC bioinformatics 21, 1-8, 2020
Custom long non-coding RNA capture enhances detection sensitivity in different human sample types
A Morlion, C Everaert, J Nuytens, E Hulstaert, J Vandesompele, ...
RNA biology 18 (sup1), 215-222, 2021
Circulating immune cell dynamics as outcome predictors for immunotherapy in non-small cell lung cancer
AM Rubio, C Everaert, E Van Damme, K De Preter, K Vermaelen
Journal for Immunotherapy of Cancer 11 (8), 2023
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
V Vermeirssen, J Deleu, A Morlion, C Everaert, J De Wilde, J Anckaert, ...
NAR cancer 4 (4), zcac037, 2022
Blocking abundant RNA transcripts by high-affinity oligonucleotides during transcriptome library preparation
C Everaert, J Verwilt, K Verniers, N Vandamme, A Marcos Rubio, ...
Biological Procedures Online 25 (1), 7, 2023
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