Nabeel Ahmed
Nabeel Ahmed
Sr. Scientist, Bioinformatics, Moderna Therapeutics
Verified email at
Cited by
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Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding
K Döring, N Ahmed, T Riemer, HG Suresh, Y Vainshtein, M Habich, ...
Cell 170 (2), 298-311, 2017
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
AK Sharma, P Sormanni, N Ahmed, P Ciryam, UA Friedrich, G Kramer, ...
PLoS computational biology 15 (5), e1007070, 2019
Accurate prediction of cellular co-translational folding indicates proteins can switch from post-to co-translational folding
DA Nissley, AK Sharma, N Ahmed, UA Friedrich, G Kramer, B Bukau, ...
Nature communications 7 (1), 10341, 2016
Electrostatic interactions govern extreme nascent protein ejection times from ribosomes and can delay ribosome recycling
DA Nissley, QV Vu, F Trovato, N Ahmed, Y Jiang, MS Li, EP O’Brien
Journal of the American Chemical Society 142 (13), 6103-6110, 2020
Identifying A-and P-site locations on ribosome-protected mRNA fragments using Integer Programming
N Ahmed, P Sormanni, P Ciryam, M Vendruscolo, CM Dobson, ...
Scientific reports 9 (1), 6256, 2019
Determinants of translation speed are randomly distributed across transcripts resulting in a universal scaling of protein synthesis times
AK Sharma, N Ahmed, EP O’Brien
Physical Review E 97 (2), 022409, 2018
Pairs of amino acids at the P-and A-sites of the ribosome predictably and causally modulate translation-elongation rates
N Ahmed, UA Friedrich, P Sormanni, P Ciryam, NS Altman, B Bukau, ...
Journal of molecular biology 432 (24), 166696, 2020
RiboA: a web application to identify ribosome A-site locations in ribosome profiling data
D Shao, N Ahmed, N Soni, EP O’Brien
BMC bioinformatics 22, 1-8, 2021
Evolutionarily-encoded translation kinetics coordinate co-translational SSB chaperone binding in yeast
N Ahmed, K Döring, G Kramer, B Bukau, EP O'Brien
Biophysical Journal 114 (3), 395a, 2018
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