Olin Silander

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Nikki E. FreedUniversity of Auckland, New ZealandVerified email at auckland.ac.nz
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Martin AckermannMicrobial Systems Ecology, Eawag, ETH Zurich and EPFL, SwitzerlandVerified email at env.ethz.ch
Lin ChaoProfessor of Ecology, Behavior and Evolution, UCSDVerified email at ucsd.edu
Markéta Vlková-ŽlebkováPostdoc, Max Planck Institute for Biology TübingenVerified email at tuebingen.mpg.de
William S. PearmanUniversity of AucklandVerified email at auckland.ac.nz
Olivier TenaillonInstitut Cochin, Université Paris Cité, Inserm, CNRS , Professor Ecole PolytechniqueVerified email at inserm.fr
Paul B RaineyMax-Planck Institute for Evolutionary Biology, Plön, Germany & ESPCI, Paris, FranceVerified email at evolbio.mpg.de
Frederic BertelsMax Planck Institute for Evolutionary BiologyVerified email at evolbio.mpg.de
Mikhail PachkovUniversity of Basel, Swiss Institute of BioinformaticsVerified email at unibas.ch
Florian JugFondatione Human TechnopoleVerified email at fht.org
Thomas PfohlUniversity of FreiburgVerified email at physik.uni-freiburg.de
Gene MyersMax-Planck Institute for Molecular Cell Biology & GeneticsVerified email at mpi-cbg.de
James DaleProfessor in Zoology, Massey University, New ZealandVerified email at massey.ac.nz
Georgia BreckellResearch Scientist at MPI, NZVerified email at mpi.govt.nz
Paul E. TurnerRachel Carson Professor of Ecology and Evolutionary Biology, Yale UniversityVerified email at yale.edu
Daniel M WeinreichBrown UniversityVerified email at brown.edu
Kevin M. WrightActio BiosciencesVerified email at actiobio.com
Uri AlonWeizmann Institute, Princeton UniversityVerified email at weizmann.ac.il
Nela NikolicUniversity of SouthamptonVerified email at soton.ac.uk

Olin Silander

Senior Research Fellow, Liggins Institute, University of Auckland

Verified email at auckland.ac.nz - Homepage

microbial evolution gene expression microbial diversity


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Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	472	2014
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding NE Freed, M Vlková, MB Faisal, OK Silander Biology Methods and Protocols 5 (1), bpaa014, 2020	257	2020
Understanding the evolutionary fate of finite populations: the dynamics of mutational effects OK Silander, O Tenaillon, L Chao PLoS biology 5 (4), e94, 2007	217	2007
A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli OK Silander, N Nikolic, A Zaslaver, A Bren, U Kikoin, Ilya, Alon, ... PLoS Genetics, 2012	201	2012
Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021	190	2021
Epistasis between deleterious mutations and the evolution of recombination RD Kouyos, OK Silander, S Bonhoeffer Trends in ecology & evolution 22 (6), 308-315, 2007	173	2007
Alterations of the X-linked lymphoproliferative disease geneSH2D1A in common variable immunodeficiency syndrome M Morra, O Silander, S Calpe, M Choi, H Oettgen, L Myers, A Etzioni, ... Blood, The Journal of the American Society of Hematology 98 (5), 1321-1325, 2001	135	2001
Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software M Kaiser, F Jug, T Julou, S Deshpande, T Pfohl, OK Silander, G Myers, ... Nature communications 9 (1), 212, 2018	126	2018
Expression noise facilitates the evolution of gene regulation L Wolf, OK Silander, E van Nimwegen eLife 4, e05856, 2015	124	2015
Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads WS Pearman, NE Freed, OK Silander BMC Bioinformatics 21, 1-15, 2020	112	2020
Characterization of SH2D1A missense mutations identified in X-linked lymphoproliferative disease patients M Morra, M Simarro-Grande, M Martin, ASI Chen, A Lanyi, O Silander, ... Journal of Biological Chemistry 276 (39), 36809-36816, 2001	108	2001
A simple screen to identify promoters conferring high levels of phenotypic noise NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann PLoS genetics 4 (12), e1000307, 2008	99	2008
Patterns of evolutionary conservation of essential genes correlate with their compensability T Bergmiller, M Ackermann, OK Silander PLoS genetics 8 (6), e1002803, 2012	96	2012
Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli N Hofsteenge, E van Nimwegen, OK Silander BMC microbiology 13, 1-11, 2013	93	2013
Quantifying organismal complexity using a population genetic approach O Tenaillon, OK Silander, JP Uzan, L Chao PloS one 2 (2), e217, 2007	86	2007
The predictability of molecular evolution during functional innovation D Blank, L Wolf, M Ackermann, OK Silander Proceedings of the National Academy of Sciences 111 (8), 3044-3049, 2014	84	2014
Widespread genetic exchange among terrestrial bacteriophages OK Silander, DM Weinreich, KM Wright, KJ O'Keefe, CU Rang, PE Turner, ... Proceedings of the National Academy of Sciences 102 (52), 19009-19014, 2005	73	2005
Opposite effects of KCTD subunit domains on GABAB receptor-mediated desensitization R Seddik, SP Jungblut, OK Silander, M Rajalu, T Fritzius, V Besseyrias, ... Journal of Biological Chemistry 287 (47), 39869-39877, 2012	59	2012
Use of genomics to track coronavirus disease outbreaks, New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... Emerging Infectious Diseases 27 (5), 1317, 2021	44	2021
Combining Shigella Tn-seq data with Gold-standard E. coli Gene Deletion Data Suggests Rare Transitions between Essential and Non-essential Gene Functionality NE Freed, D Bumann, O Silander BMC Microbiology 16, 203, 2016	27	2016

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