Joshua Baller
Joshua Baller
Associate Vice President for Research Computing, University of Virginia
Verified email at
Cited by
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Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
T Cermak, EL Doyle, M Christian, L Wang, Y Zhang, C Schmidt, JA Baller, ...
Nucleic acids research 39 (12), e82-e82, 2011
Transcription activator-like effector nucleases enable efficient plant genome engineering
Y Zhang, F Zhang, X Li, JA Baller, Y Qi, CG Starker, AJ Bogdanove, ...
Plant physiology 161 (1), 20-27, 2013
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
Y Qi, Y Zhang, F Zhang, JA Baller, SC Cleland, Y Ryu, CG Starker, ...
Genome research 23 (3), 547-554, 2013
The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease
AA Pragman, T Lyu, JA Baller, TJ Gould, RF Kelly, CS Reilly, RE Isaacson, ...
Microbiome 6, 1-19, 2018
An RNA polymerase III subunit determines sites of retrotransposon integration
PL Antoine Bridier-Nahmias, Aurélie Tchalikian-Cosson, Joshua A. Baller ...
Science 348 (6234), 585-588, 2015
Putting genetic interactions in context through a global modular decomposition
J Bellay, G Atluri, TL Sing, K Toufighi, M Costanzo, PSM Ribeiro, ...
Genome research 21 (8), 1375-1387, 2011
A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
JA Baller, J Gao, R Stamenova, MJ Curcio, DF Voytas
Genome research 22 (4), 704-713, 2012
Comprehensive functional analysis of the Enterococcus faecalis core genome using an ordered, sequence-defined collection of insertional mutations in strain OG1RF
JL Dale, KB Beckman, JLE Willett, JL Nilson, NP Palani, JA Baller, ...
Msystems 3 (5), 10.1128/msystems. 00062-18, 2018
The Three Clades of the Telomere-Associated TLO Gene Family of Candida albicans Have Different Splicing, Localization, and Expression Features
MZ Anderson, JA Baller, K Dulmage, L Wigen, J Berman
Eukaryotic cell 11 (10), 1268-1275, 2012
Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2
MZ Anderson, AC Gerstein, L Wigen, JA Baller, J Berman
PLoS genetics 10 (7), e1004436, 2014
ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel
J Baller, T Kono, A Herman, Y Zhang
Proceedings of the Practice and Experience in Advanced Research Computing on …, 2019
ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: a disconnect between somatic and germinal cells
Q Shan, NJ Baltes, P Atkins, ER Kirkland, Y Zhang, JA Baller, LG Lowder, ...
Journal of genetics and genomics= Yi chuan xue bao 45 (12), 681, 2018
Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants
Y Qi, Y Zhang, JA Baller, DF Voytas
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 783, 9-14, 2016
Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5
JA Baller, J Gao, DF Voytas
Proceedings of the National Academy of Sciences 108 (51), 20351-20356, 2011
Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres
HJ Tsai, JA Baller, I Liachko, A Koren, LS Burrack, MA Hickman, ...
MBio 5 (5), 10.1128/mbio. 01703-14, 2014
Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut
JD Shah, J Baller, Y Zhang, K Silverstein, Z Xing, CJ Cardona
Journal of virological methods 209, 15-24, 2014
Development of the intestinal RNA virus community of healthy broiler chickens
JD Shah, PT Desai, Y Zhang, SK Scharber, J Baller, ZS Xing, CJ Cardona
PLoS One 11 (2), e0150094, 2016
Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies
MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss
Environmental Toxicology and Chemistry 41 (9), 2107-2123, 2022
Serotonin Transporter (SLC6A4) and FK506-Binding Protein 5 (FKBP5) Genotype and Methylation Relationships with Response to Meditation in Veterans with PTSD
A Lee, P Thuras, J Baller, C Jiao, B Guo, CR Erbes, MA Polusny, C Liu, ...
Molecular neurobiology, 1-15, 2024
Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies
MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss
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