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Joshua Baller
Joshua Baller
Associate Vice President for Research Computing, University of Virginia
Verified email at umn.edu
Title
Cited by
Cited by
Year
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
T Cermak, EL Doyle, M Christian, L Wang, Y Zhang, C Schmidt, JA Baller, ...
Nucleic acids research 39 (12), e82-e82, 2011
27532011
Transcription activator-like effector nucleases enable efficient plant genome engineering
Y Zhang, F Zhang, X Li, JA Baller, Y Qi, CG Starker, AJ Bogdanove, ...
Plant physiology 161 (1), 20-27, 2013
5722013
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
Y Qi, Y Zhang, F Zhang, JA Baller, SC Cleland, Y Ryu, CG Starker, ...
Genome research 23 (3), 547-554, 2013
1972013
The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease
AA Pragman, T Lyu, JA Baller, TJ Gould, RF Kelly, CS Reilly, RE Isaacson, ...
Microbiome 6, 1-19, 2018
1332018
An RNA polymerase III subunit determines sites of retrotransposon integration
PL Antoine Bridier-Nahmias, Aurélie Tchalikian-Cosson, Joshua A. Baller ...
Science 348 (6234), 585-588, 2015
832015
Putting genetic interactions in context through a global modular decomposition
J Bellay, G Atluri, TL Sing, K Toufighi, M Costanzo, PSM Ribeiro, ...
Genome research 21 (8), 1375-1387, 2011
742011
A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
JA Baller, J Gao, R Stamenova, MJ Curcio, DF Voytas
Genome research 22 (4), 704-713, 2012
702012
Comprehensive functional analysis of the Enterococcus faecalis core genome using an ordered, sequence-defined collection of insertional mutations in strain OG1RF
JL Dale, KB Beckman, JLE Willett, JL Nilson, NP Palani, JA Baller, ...
Msystems 3 (5), 10.1128/msystems. 00062-18, 2018
602018
The Three Clades of the Telomere-Associated TLO Gene Family of Candida albicans Have Different Splicing, Localization, and Expression Features
MZ Anderson, JA Baller, K Dulmage, L Wigen, J Berman
Eukaryotic cell 11 (10), 1268-1275, 2012
462012
Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2
MZ Anderson, AC Gerstein, L Wigen, JA Baller, J Berman
PLoS genetics 10 (7), e1004436, 2014
352014
ChURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel
J Baller, T Kono, A Herman, Y Zhang
Proceedings of the Practice and Experience in Advanced Research Computing on …, 2019
342019
ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: a disconnect between somatic and germinal cells
Q Shan, NJ Baltes, P Atkins, ER Kirkland, Y Zhang, JA Baller, LG Lowder, ...
Journal of genetics and genomics= Yi chuan xue bao 45 (12), 681, 2018
312018
Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants
Y Qi, Y Zhang, JA Baller, DF Voytas
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 783, 9-14, 2016
292016
Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5
JA Baller, J Gao, DF Voytas
Proceedings of the National Academy of Sciences 108 (51), 20351-20356, 2011
292011
Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres
HJ Tsai, JA Baller, I Liachko, A Koren, LS Burrack, MA Hickman, ...
MBio 5 (5), 10.1128/mbio. 01703-14, 2014
212014
Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut
JD Shah, J Baller, Y Zhang, K Silverstein, Z Xing, CJ Cardona
Journal of virological methods 209, 15-24, 2014
162014
Development of the intestinal RNA virus community of healthy broiler chickens
JD Shah, PT Desai, Y Zhang, SK Scharber, J Baller, ZS Xing, CJ Cardona
PLoS One 11 (2), e0150094, 2016
132016
Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies
MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss
Environmental Toxicology and Chemistry 41 (9), 2107-2123, 2022
12022
Serotonin Transporter (SLC6A4) and FK506-Binding Protein 5 (FKBP5) Genotype and Methylation Relationships with Response to Meditation in Veterans with PTSD
A Lee, P Thuras, J Baller, C Jiao, B Guo, CR Erbes, MA Polusny, C Liu, ...
Molecular neurobiology, 1-15, 2024
2024
Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies
MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss
2022
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