Francisco Avila Cobos
Francisco Avila Cobos
Postdoctoral researcher, Ghent University
Verified email at
Cited by
Cited by
Benchmarking of cell type deconvolution pipelines for transcriptomics data
FA Cobos, J Alquicira-Hernandez, JE Powell, P Mestdagh, K De Preter
Nature Communications 11 (1), 1-14, 2020
Computational deconvolution of transcriptomics data from mixed cell populations
F Avila Cobos, J Vandesompele, P Mestdagh
Bioinformatics 34 (11), 1969-1979, 2018
Asthma inflammatory phenotypes show differential microRNA expression in sputum
T Maes, FA Cobos, F Schleich, V Sorbello, M Henket, K De Preter, ...
Journal of Allergy and Clinical Immunology 137 (5), 1433-1446, 2016
MicroRNA profiling reveals a role for microRNA-218-5p in the pathogenesis of chronic obstructive pulmonary disease
G Conickx, P Mestdagh, F Avila Cobos, FM Verhamme, T Maes, ...
American journal of respiratory and critical care medicine 195 (1), 43-56, 2017
Long noncoding RNA expression profiling in cancer: challenges and opportunities
L Lorenzi, F Avila Cobos, A Decock, C Everaert, H Helsmoortel, S Lefever, ...
Genes, Chromosomes and Cancer 58 (4), 191-199, 2019
The RNA Atlas expands the catalog of human non-coding RNAs
L Lorenzi, HS Chiu, FA Cobos, S Gross, PJ Volders, R Cannoodt, ...
Nature Biotechnology, 1-13, 2021
Charting extracellular transcriptomes in The Human Biofluid RNA Atlas
E Hulstaert, A Morlion, FA Cobos, K Verniers, J Nuytens, EV Eynde, ...
bioRxiv, 823369, 2019
The role of miR-155 in cigarette smoke-induced pulmonary inflammation and COPD
EG De Smet, HP Van Eeckhoutte, FA Cobos, E Blomme, FM Verhamme, ...
Mucosal Immunology 13 (3), 423-436, 2020
microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
G Conickx, FA Cobos, M van den Berge, A Faiz, W Timens, PS Hiemstra, ...
Scientific reports 7 (1), 1-14, 2017
Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical …
G Vergauwen, J Tulkens, C Pinheiro, F Avila Cobos, S Dedeyne, ...
Journal of extracellular vesicles 10 (10), e12122, 2021
Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia
A Wallaert, K Durinck, W Van Loocke, I Van de Walle, F Matthijssens, ...
Leukemia 30 (9), 1927-1930, 2016
A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing
K Verboom, W Van Loocke, PJ Volders, B Decaesteker, FA Cobos, ...
haematologica 103 (12), e585, 2018
A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics
E D’haene, R Bar-Yaacov, I Bariah, L Vantomme, S Van Loo, FA Cobos, ...
Human molecular genetics 28 (5), 818-827, 2019
A comprehensive custom panel evaluation for routine hereditary cancer testing: improving the yield of germline mutation detection
C Velázquez, E Lastra, FA Cobos, L Abella, V de la Cruz, BA Hernando, ...
Journal of Translational Medicine 18 (1), 1-12, 2020
Effective methods for bulk RNA-Seq deconvolution using scnRNA-Seq transcriptomes
FA Cobos, MJN Panah, J Epps, X Long, TK Man, HS Chiu, E Chomsky, ...
bioRxiv, 2022
Performance of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
J Anckaert, FA Cobos, A Decock, J Deleu, O De Wever, J De Wilde, ...
bioRxiv, 2021
Zipper plot: visualizing transcriptional activity of genomic regions
FA Cobos, J Anckaert, PJ Volders, C Everaert, D Rombaut, ...
BMC bioinformatics 18 (1), 1-9, 2017
Germline Genetic Findings Which May Impact Therapeutic Decisions in Families with a Presumed Predisposition for Hereditary Breast and Ovarian Cancer
C Velázquez, EM Esteban-Cardeñosa, F Avila Cobos, E Lastra, LE Abella, ...
Cancers 12 (8), 2151, 2020
DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification
C Decamps, A Arnaud, F Petitprez, M Ayadi, A Baurès, L Armenoult, ...
BMC bioinformatics 22 (1), 1-17, 2021
The role of microRNA-155 in cigarette smoke-induced inflammation
E De Smet, P Mestdagh, FA Cobos, E Blomme, F Verhamme, S Provoost, ...
European Respiratory Journal 52 (suppl 62), 2018
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