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Francisco Avila Cobos
Francisco Avila Cobos
Postdoctoral researcher, Ghent University
Verified email at UGent.be
Title
Cited by
Cited by
Year
Benchmarking of cell type deconvolution pipelines for transcriptomics data
FA Cobos, J Alquicira-Hernandez, JE Powell, P Mestdagh, K De Preter
Nature Communications 11 (1), 1-14, 2020
3702020
Computational deconvolution of transcriptomics data from mixed cell populations
F Avila Cobos, J Vandesompele, P Mestdagh
Bioinformatics 34 (11), 1969-1979, 2018
2322018
Asthma inflammatory phenotypes show differential microRNA expression in sputum
T Maes, FA Cobos, F Schleich, V Sorbello, M Henket, K De Preter, ...
Journal of Allergy and Clinical Immunology 137 (5), 1433-1446, 2016
2052016
MicroRNA profiling reveals a role for microRNA-218-5p in the pathogenesis of chronic obstructive pulmonary disease
G Conickx, P Mestdagh, F Avila Cobos, FM Verhamme, T Maes, ...
American journal of respiratory and critical care medicine 195 (1), 43-56, 2017
1432017
Long noncoding RNA expression profiling in cancer: challenges and opportunities
L Lorenzi, F Avila Cobos, A Decock, C Everaert, H Helsmoortel, S Lefever, ...
Genes, Chromosomes and Cancer 58 (4), 191-199, 2019
1342019
The RNA Atlas expands the catalog of human non-coding RNAs
L Lorenzi, HS Chiu, FA Cobos, S Gross, PJ Volders, R Cannoodt, ...
Nature Biotechnology, 1-13, 2021
1222021
Charting extracellular transcriptomes in The Human Biofluid RNA Atlas
E Hulstaert, A Morlion, FA Cobos, K Verniers, J Nuytens, EV Eynde, ...
bioRxiv, 823369, 2019
802019
The role of miR-155 in cigarette smoke-induced pulmonary inflammation and COPD
EG De Smet, HP Van Eeckhoutte, FA Cobos, E Blomme, FM Verhamme, ...
Mucosal Immunology 13 (3), 423-436, 2020
722020
Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical …
G Vergauwen, J Tulkens, C Pinheiro, F Avila Cobos, S Dedeyne, ...
Journal of extracellular vesicles 10 (10), e12122, 2021
592021
microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
G Conickx, FA Cobos, M van den Berge, A Faiz, W Timens, PS Hiemstra, ...
Scientific reports 7 (1), 1-14, 2017
572017
Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia
A Wallaert, K Durinck, W Van Loocke, I Van de Walle, F Matthijssens, ...
Leukemia 30 (9), 1927-1930, 2016
392016
A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing
K Verboom, W Van Loocke, PJ Volders, B Decaesteker, FA Cobos, ...
haematologica 103 (12), e585, 2018
262018
A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics
E D’haene, R Bar-Yaacov, I Bariah, L Vantomme, S Van Loo, FA Cobos, ...
Human molecular genetics 28 (5), 818-827, 2019
252019
A comprehensive custom panel evaluation for routine hereditary cancer testing: improving the yield of germline mutation detection
C Velázquez, E Lastra, FA Cobos, L Abella, V de la Cruz, BA Hernando, ...
Journal of Translational Medicine 18 (1), 1-12, 2020
212020
Effective methods for bulk RNA-Seq deconvolution using scnRNA-Seq transcriptomes
FA Cobos, MJN Panah, J Epps, X Long, TK Man, HS Chiu, E Chomsky, ...
bioRxiv, 2022
172022
Germline Genetic Findings Which May Impact Therapeutic Decisions in Families with a Presumed Predisposition for Hereditary Breast and Ovarian Cancer
C Velázquez, EM Esteban-Cardeñosa, F Avila Cobos, E Lastra, LE Abella, ...
Cancers 12 (8), 2151, 2020
92020
DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification
C Decamps, A Arnaud, F Petitprez, M Ayadi, A Baurès, L Armenoult, ...
BMC bioinformatics 22 (1), 1-17, 2021
82021
Performance of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
J Anckaert, FA Cobos, A Decock, J Deleu, O De Wever, J De Wilde, ...
bioRxiv, 2021
82021
Zipper plot: visualizing transcriptional activity of genomic regions
FA Cobos, J Anckaert, PJ Volders, C Everaert, D Rombaut, ...
BMC bioinformatics 18 (1), 1-9, 2017
82017
Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions
K Schoofs, A Philippron, F Avila Cobos, J Koster, S Lefever, J Anckaert, ...
Scientific Data 9 (1), 1-12, 2022
22022
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