Peter Varnai
Peter Varnai
Technopolis Group
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Making sense of big data in health research: towards an EU action plan
C Auffray, R Balling, I Barroso, L Bencze, M Benson, J Bergeron, ...
Genome medicine 8, 1-13, 2016
Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(CpG) Steps
DL Beveridge, G Barreiro, K Suzie Byun, DA Case, TE Cheatham III, ...
Biophysical journal 87 (6), 3799-3813, 2004
DNA and its counterions: a molecular dynamics study
P Varnai, K Zakrzewska
Nucleic acids research 32 (14), 4269-4280, 2004
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique …
SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, ...
Biophysical journal 89 (6), 3721-3740, 2005
A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics
STD Hsu, P Varnai, A Bugaut, AP Reszka, S Neidle, S Balasubramanian
Journal of the American Chemical Society 131 (37), 13399-13409, 2009
Determination of the free energy landscape of α-synuclein using spin label nuclear magnetic resonance measurements
JR Allison, P Varnai, CM Dobson, M Vendruscolo
Journal of the American Chemical Society 131 (51), 18314-18326, 2009
Periplasmic arabinogalactan glycoproteins act as a calcium capacitor that regulates plant growth and development
DTA Lamport, P Várnai
New Phytologist 197 (1), 58-64, 2013
Base pair opening within B‐DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations
E Giudice, P Várnai, R Lavery
Nucleic acids research 31 (5), 1434-1443, 2003
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
B Richter, J Gsponer, P Várnai, X Salvatella, M Vendruscolo
Journal of biomolecular NMR 37, 117-135, 2007
Plant O-hydroxyproline arabinogalactans are composed of repeating trigalactosyl subunits with short bifurcated side chains
L Tan, P Varnai, DTA Lamport, C Yuan, J Xu, F Qiu, MJ Kieliszewski
Journal of Biological Chemistry 285 (32), 24575-24583, 2010
α/γ Transitions in the B‐DNA backbone
P Várnai, D Djuranovic, R Lavery, B Hartmann
Nucleic acids research 30 (24), 5398-5406, 2002
Base flipping in DNA: pathways and energetics studied with molecular dynamic simulations
P Várnai, R Lavery
Journal of the American Chemical Society 124 (25), 7272-7273, 2002
About the aromaticity of five-membered heterocycles
L Nyulászi, P Várnai, T Veszprémi
Journal of Molecular Structure: THEOCHEM 358 (1-3), 55-61, 1995
Back to the future with the AGP–Ca2+ flux capacitor
DTA Lamport, P Varnai, CE Seal
Annals of Botany 114 (6), 1069-1085, 2014
Ab initio QM/MM dynamics simulation of the tetrahedral intermediate of serine proteases: insights into the active site hydrogen-bonding network
M Topf, P Várnai, WG Richards
Journal of the American Chemical Society 124 (49), 14780-14788, 2002
Opening Mechanism of G.T/U Pairs in DNA and RNA Duplexes: A Combined Study of Imino Proton Exchange and Molecular Dynamics Simulation
P Várnai, M Canalia, JL Leroy
Journal of the American Chemical Society 126 (44), 14659-14667, 2004
Computer simulation studies of the catalytic mechanism of human aldose reductase
P Várnai, A Warshel
Journal of the American Chemical Society 122 (16), 3849-3860, 2000
Energetic and conformational aspects of A:T base‐pair opening within the DNA double helix
E Giudice, P Várnai, R Lavery
ChemPhysChem 2 (11), 673-677, 2001
Differential stability of DNA crossovers in solution mediated by divalent cations
P Varnai, Y Timsit
Nucleic acids research 38 (12), 4163-4172, 2010
Modelling the catalytic reaction in human aldose reductase
P Várnai, WG Richards, PD Lyne
Proteins: Structure, Function, and Bioinformatics 37 (2), 218-227, 1999
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