| Comet: An open‐source MS/MS sequence database search tool JK Eng, TA Jahan, MR Hoopmann Proteomics 13 (1), 22-24, 2013 | 1546 | 2013 |
| Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ... Cell 166 (3), 766-778, 2016 | 341 | 2016 |
| The 5300-year-old Helicobacter pylori genome of the Iceman F Maixner, B Krause-Kyora, D Turaev, A Herbig, MR Hoopmann, ... Science 351 (6269), 162-165, 2016 | 289 | 2016 |
| A Deeper Look into Comet—Implementation and Features JK Eng, MR Hoopmann, TA Jahan, JD Egertson, WS Noble, MJ MacCoss Journal of The American Society for Mass Spectrometry 26 (11), 1865-1874, 2015 | 272 | 2015 |
| Kojak: efficient analysis of chemically cross-linked protein complexes MR Hoopmann, A Zelter, RS Johnson, M Riffle, MJ MacCoss, TN Davis, ... Journal of proteome research 14 (5), 2190-2198, 2015 | 203 | 2015 |
| High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry MR Hoopmann, GL Finney, MJ MacCoss Analytical chemistry 79 (15), 5620-5632, 2007 | 196 | 2007 |
| Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry M Bern, G Finney, MR Hoopmann, G Merrihew, MJ Toth, MJ MacCoss Analytical chemistry 82 (3), 833-841, 2010 | 164 | 2010 |
| Crux: rapid open source protein tandem mass spectrometry analysis S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ... Journal of proteome research 13 (10), 4488-4491, 2014 | 159 | 2014 |
| Comparison of database search strategies for high precursor mass accuracy MS/MS data EJ Hsieh, MR Hoopmann, B MacLean, MJ MacCoss Journal of proteome research 9 (2), 1138-1143, 2010 | 155 | 2010 |
| The state of the human proteome in 2012 as viewed through PeptideAtlas T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ... Journal of proteome research 12 (1), 162-171, 2013 | 140 | 2013 |
| First community-wide, comparative cross-linking mass spectrometry study C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ... Analytical chemistry 91 (11), 6953-6961, 2019 | 138 | 2019 |
| Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification CR Weisbrod, JK Eng, MR Hoopmann, T Baker, JE Bruce Journal of proteome research 11 (3), 1621-1632, 2012 | 119 | 2012 |
| PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ... Journal of proteome research 18 (12), 4262-4272, 2019 | 112 | 2019 |
| Cross-linking measurements of in vivo protein complex topologies C Zheng, L Yang, MR Hoopmann, JK Eng, X Tang, CR Weisbrod, ... Molecular & Cellular Proteomics 10 (10), 2011 | 108 | 2011 |
| Assessing the dynamic range and peak capacity of nanoflow LC− FAIMS− MS on an ion trap mass spectrometer for proteomics JD Canterbury, X Yi, MR Hoopmann, MJ MacCoss Analytical chemistry 80 (18), 6888-6897, 2008 | 107 | 2008 |
| Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks H Roume, A Heintz-Buschart, EEL Muller, P May, VP Satagopam, ... Npj Biofilms And Microbiomes 1, 2015 | 98 | 2015 |
| The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching L Yang, B Vaitheesvaran, K Hartil, AJ Robinson, MR Hoopmann, JK Eng, ... Journal of proteome research 10 (9), 4134-4149, 2011 | 91 | 2011 |
| Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ... Nature communications 5 (1), 5603, 2014 | 84 | 2014 |
| Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, ... Analytical chemistry 80 (4), 961-971, 2008 | 82 | 2008 |
| Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ... Nature communications 11 (1), 5281, 2020 | 80 | 2020 |
Robert MoritzProfessor, Institute for Systems BiologyVerified email at systemsbiology.org
