Theo dơi
Abhishek Singharoy
Abhishek Singharoy
Associate professor
Email được xác minh tại asu.edu - Trang chủ
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 2020
24152020
Structural mechanism of voltage-dependent gating in an isolated voltage-sensing domain
Q Li, S Wanderling, M Paduch, D Medovoy, A Singharoy, R McGreevy, ...
Nature structural & molecular biology 21 (3), 244-252, 2014
2662014
ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome
AT Baker, RJ Boyd, D Sarkar, A Teijeira-Crespo, CK Chan, E Bates, ...
Science Advances 7 (49), eabl8213, 2021
1682021
Atoms to phenotypes: molecular design principles of cellular energy metabolism
A Singharoy, C Maffeo, KH Delgado-Magnero, DJK Swainsbury, M Sener, ...
Cell 179 (5), 1098-1111. e23, 2019
1672019
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
Elife 5, e16105, 2016
1652016
Retrieving functional pathways of biomolecules from single-particle snapshots
A Dashti, G Mashayekhi, M Shekhar, D Ben Hail, S Salah, P Schwander, ...
Nature communications 11 (1), 4734, 2020
1052020
Advances in the molecular dynamics flexible fitting method for cryo-EM modeling
R McGreevy, I Teo, A Singharoy, K Schulten
Methods 100, 50-60, 2016
1002016
A structural model of the active ribosome-bound membrane protein insertase YidC
S Wickles, A Singharoy, J Andreani, S Seemayer, L Bischoff, ...
Elife 3, e03035, 2014
962014
Overall energy conversion efficiency of a photosynthetic vesicle
M Sener, J Strumpfer, A Singharoy, CN Hunter, K Schulten
Elife 5, e09541, 2016
952016
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
Nature Methods 18, 156-164, 2021
922021
Conserved methionine dictates substrate preference in Nramp-family divalent metal transporters
AT Bozzi, LB Bane, WA Weihofen, AL McCabe, A Singharoy, CJ Chipot, ...
Proceedings of the National Academy of Sciences 113 (37), 10310-10315, 2016
902016
Computational methodologies for real-space structural refinement of large macromolecular complexes
BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ...
Annual Review of Biophysics 45 (1), 253-278, 2016
812016
A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion
M Botte, NR Zaccai, JLÀ Nijeholt, R Martin, K Knoops, G Papai, J Zou, ...
Scientific reports 6 (1), 38399, 2016
632016
Crystal structure and conformational change mechanism of a bacterial Nramp-family divalent metal transporter
AT Bozzi, LB Bane, WA Weihofen, A Singharoy, ER Guillen, HL Ploegh, ...
Structure 24 (12), 2102-2114, 2016
632016
Cryo-EM and MD infer water-mediated proton transport and autoinhibition mechanisms of Vo complex
SH Roh, M Shekhar, G Pintilie, C Chipot, S Wilkens, A Singharoy, W Chiu
Science Advances 6 (41), eabb9605, 2020
592020
Flexibility coexists with shape-persistence in cyanostar macrocycles
Y Liu, A Singharoy, CG Mayne, A Sengupta, K Raghavachari, K Schulten, ...
Journal of the American Chemical Society 138 (14), 4843-4851, 2016
592016
Chemomechanical coupling in hexameric protein–protein interfaces harnesses energy within V-type ATPases
A Singharoy, C Chipot, M Moradi, K Schulten
Journal of the American Chemical Society 139 (1), 293-310, 2017
552017
xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures
R McGreevy, A Singharoy, Q Li, J Zhang, D Xu, E Perozo, K Schulten
Acta Crystallographica Section D: Biological Crystallography 70 (9), 2344-2355, 2014
522014
Simultaneous Presence of Both Open Metal Sites and Free Functional Organic Sites in a Noncentrosymmetric Dynamic Metal–Organic Framework with Bimodal Catalytic and Sensing …
R Saha, B Joarder, AS Roy, S Manirul Islam, S Kumar
Chemistry–A European Journal 19 (49), 16607-16614, 2013
502013
CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps
M Shekhar, G Terashi, C Gupta, D Sarkar, G Debussche, NJ Sisco, ...
Matter 4 (10), 3195-3216, 2021
47*2021
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