Jonathan Friedman
Cited by
Cited by
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
A framework for human microbiome research
Nature 486 (7402), 215-221, 2012
Inferring correlation networks from genomic survey data
J Friedman, EJ Alm
Public Library of Science 8 (9), e1002687, 2012
Host lifestyle affects human microbiota on daily timescales
LA David, AC Materna, J Friedman, MI Campos-Baptista, MC Blackburn, ...
Genome biology 15, 1-15, 2014
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
Population genomics of early events in the ecological differentiation of bacteria
BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ...
science 336 (6077), 48-51, 2012
Community structure follows simple assembly rules in microbial microcosms
J Friedman, LM Higgins, J Gore
Nature ecology & evolution 1 (5), 0109, 2017
Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation
CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ...
Cell host & microbe 23 (2), 229-240. e5, 2018
Universality of human microbial dynamics
A Bashan, TE Gibson, J Friedman, VJ Carey, ST Weiss, EL Hohmann, ...
Nature 534 (7606), 259-262, 2016
Massively parallel screening of synthetic microbial communities
J Kehe, A Kulesa, A Ortiz, CM Ackerman, SG Thakku, D Sellers, S Kuehn, ...
Proceedings of the National Academy of Sciences 116 (26), 12804-12809, 2019
Deciphering functional redundancy in the human microbiome
L Tian, XW Wang, AK Wu, Y Fan, J Friedman, A Dahlin, MK Waldor, ...
Nature communications 11 (1), 6217, 2020
Mapping the ecological networks of microbial communities
Y Xiao, MT Angulo, J Friedman, MK Waldor, ST Weiss, YY Liu
Nature communications 8 (1), 2042, 2017
Positive interactions are common among culturable bacteria
J Kehe, A Ortiz, A Kulesa, J Gore, PC Blainey, J Friedman
Science advances 7 (45), eabi7159, 2021
Core gut microbial communities are maintained by beneficial interactions and strain variability in fish
F Kokou, G Sasson, J Friedman, S Eyal, O Ovadia, S Harpaz, A Cnaani, ...
Nature microbiology 4 (12), 2456-2465, 2019
Looking for Darwin's footprints in the microbial world
BJ Shapiro, LA David, J Friedman, EJ Alm
Trends in microbiology 17 (5), 196-204, 2009
Mortality causes universal changes in microbial community composition
CI Abreu, J Friedman, VL Andersen Woltz, J Gore
Nature communications 10 (1), 2120, 2019
Ecological systems biology: The dynamics of interacting populations
J Friedman, J Gore
Current Opinion in Systems Biology 1, 114-121, 2017
Computational methods for high-throughput comparative analyses of natural microbial communities
SP Preheim, AR Perrotta, J Friedman, C Smilie, I Brito, MB Smith, E Alm
Methods in enzymology 531, 353-370, 2013
Cyanobacterial diversity and activity in modern conical microbialites
T Bosak, B Liang, TD Wu, SP Templer, A Evans, H Vali, JL Guerquin‐Kern, ...
Geobiology 10 (5), 384-401, 2012
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