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Eszter Lakatos
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NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline
RO Schenck, E Lakatos, C Gatenbee, TA Graham, ARA Anderson
BMC bioinformatics 20 (1), 1-6, 2019
1012019
Evolutionary dynamics of neoantigens in growing tumors
E Lakatos, MJ Williams, RO Schenck, WCH Cross, J Househam, L Zapata, ...
Nature genetics 52 (10), 1057-1066, 2020
952020
Phenotypic plasticity and genetic control in colorectal cancer evolution
J Househam, T Heide, GD Cresswell, I Spiteri, C Kimberley, L Zapata, ...
Nature, 1-10, 2022
842022
Multivariate moment closure techniques for stochastic kinetic models
E Lakatos, A Ale, PDW Kirk, MPH Stumpf
The Journal of chemical physics 143 (9), 094107, 2015
802015
The co-evolution of the genome and epigenome in colorectal cancer
T Heide, J Househam, GD Cresswell, I Spiteri, C Lynn, M Mossner, ...
Nature, 1-11, 2022
602022
Transition state characteristics during cell differentiation
RD Brackston, E Lakatos, MPH Stumpf
PLoS computational biology 14 (9), e1006405, 2018
482018
The mutational signatures of formalin fixation on the human genome
Q Guo, E Lakatos, IA Bakir, K Curtius, TA Graham, V Mustonen
Nature communications 13 (1), 1-14, 2022
432022
Fluctuating methylation clocks for cell lineage tracing at high temporal resolution in human tissues
C Gabbutt, RO Schenck, DJ Weisenberger, C Kimberley, A Berner, ...
Nature biotechnology 40 (5), 720-730, 2022
292022
Immunosuppressive niche engineering at the onset of human colorectal cancer
CD Gatenbee, AM Baker, RO Schenck, M Strobl, J West, MP Neves, ...
Nature Communications 13 (1), 1798, 2022
272022
Immune selection determines tumor antigenicity and influences response to checkpoint inhibitors
L Zapata, G Caravagna, MJ Williams, E Lakatos, K AbdulJabbar, ...
Nature Genetics 55 (3), 451-460, 2023
252023
MEANS: python package for Moment Expansion Approximation, iNference and Simulation
S Fan, Q Geissmann, E Lakatos, S Lukauskas, A Ale, AC Babtie, ...
Bioinformatics 32 (18), 2863-2865, 2016
182016
Control mechanisms for stochastic biochemical systems via computation of reachable sets
E Lakatos, MPH Stumpf
Royal Society open science 4 (8), 160790, 2017
102017
Stochastic analysis and control methods for molecular cell biology
E Lakatos
Imperial College London, 2017
92017
LiquidCNA: Tracking subclonal evolution from longitudinal liquid biopsies using somatic copy number alterations
E Lakatos, H Hockings, M Mossner, W Huang, M Lockley, TA Graham
Iscience 24 (8), 2021
82021
Topology of interaction between titin and myosin thick filaments
M Kellermayer, D Sziklai, Z Papp, B Decker, E Lakatos, Z Mártonfalvi
Journal of structural biology 203 (1), 46-53, 2018
82018
Protein degradation rate is the dominant mechanism accounting for the differences in protein abundance of basal p53 in a human breast and colorectal cancer cell line
E Lakatos, A Salehi-Reyhani, M Barclay, MPH Stumpf, DR Klug
PloS one 12 (5), e0177336, 2017
62017
Whole genome sequencing of 2,023 colorectal cancers reveals mutational landscapes, new driver genes and immune interactions
AJ Cornish, AJ Gruber, B Kinnersley, D Chubb, A Frangou, G Caravagna, ...
bioRxiv, 2022.11. 16.515599, 2022
52022
Adaptive therapy achieves long-term control of chemotherapy resistance in high grade ovarian cancer
H Hockings, E Lakatos, W Huang, M Mossner, MA Khan, S Metcalf, ...
bioRxiv, 2023.07. 21.549688, 2023
42023
Mutation Rate Evolution Drives Immune Escape In Mismatch Repair-Deficient Cancer
H Kayhanian, P Barmpoutis, E Lakatos, WCH Cross, G Caravagna, ...
bioRxiv, 2022.03. 06.482973, 2022
42022
Sensitivity analysis and parameter estimation of a human blood glucose regulatory system model
D Meszéna, E Lakatos, G Szederkényi
11th International Workshop on Computational Systems Biology, Costa da …, 2014
32014
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Articles 1–20