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Nicola Calonaci
Nicola Calonaci
Post-doc @ Cancer Data Science Lab, UniversitÓ di Trieste
Verified email at sissa.it - Homepage
Title
Cited by
Cited by
Year
Toward empirical force fields that match experimental observables
T Fr÷hlking, M Bernetti, N Calonaci, G Bussi
The Journal of chemical physics 152 (23), 2020
732020
Machine learning a model for RNA structure prediction
N Calonaci, A Jones, F Cuturello, M Sattler, G Bussi
NAR Genomics and Bioinformatics 2 (4), 2020
302020
Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma
S Scalera, B Ricciuti, M Mazzotta, N Calonaci, JV Alessi, L Cipriani, G Bon, ...
Annals of Oncology 34 (3), 275-288, 2023
102023
A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations
S Milite, R Bergamin, L Patruno, N Calonaci, G Caravagna
Bioinformatics 38 (9), 2512-2518, 2022
102022
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc
A Antonello, R Bergamin, N Calonaci, J Househam, S Milite, MJ Williams, ...
Genome Biology 25 (1), 38, 2024
6*2024
Effect of nematic ordering on the elasticity and yielding in disordered polymeric solids
A Giuntoli, N Calonaci, S Bernini, D Leporini
Journal of Polymer Science Part B: Polymer Physics 55 (23), 1760-1769, 2017
52017
Molecular dynamics simulations with grand-canonical reweighting suggest cooperativity effects in RNA structure probing experiments
N Calonaci, M Bernetti, A Jones, M Sattler, G Bussi
Journal of chemical theory and computation 19 (12), 3672-3685, 2023
32023
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing
L Patruno, S Milite, R Bergamin, N Calonaci, A D’Onofrio, F Anselmi, ...
PLOS Computational Biology 19 (11), e1011557, 2023
12023
Mutation frequency and copy number alterations determine prognosis and metastatic tropism in 60,000 clinical cancer samples
N Calonaci, E Krasniqi, S Scalera, G Gandolfi, S Milite, B Ricciuti, ...
medRxiv, 2024.05. 13.24307238, 2024
2024
Time of Origin and Environmental Drivers of Leukemia Immune Escape after Transplantation
C Toffalori, R Bergamin, A Antonello, AF Tortorelli, G Orofino, M Cristante, ...
Blood 142, 362, 2023
2023
Clonal Evolution of Chronic Lymphocytic Leukemia with Bimodal CD49d Expression Reveals CD49d Plasticity
E Tissino, N Calonaci, F Pozzo, G Forestieri, L Terzi Di Bergamo, F Vit, ...
Blood 140 (Supplement 1), 9844-9846, 2022
2022
Computational validation of clonal and subclonal copy number alterations from bulk tumour sequencing
A Antonello, R Bergamin, N Calonaci, J Househam, S Milite, MJ Williams, ...
bioRxiv, 2021.02. 13.429885, 2021
2021
Computational investigations of structure probing experiments for RNA structure prediction
N Calonaci
SISSA, 2020
2020
Elasticity and yielding in model polymer glasses
N CALONACI
Universita` di Pisa, 2016
2016
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Articles 1–14