Sean Kennedy
Sean Kennedy
Department of Computational Biology, Pasteur Institute
Verified email at - Homepage
Cited by
Cited by
Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
Dietary intervention impact on gut microbial gene richness
A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ...
Nature 500 (7464), 585-588, 2013
Alterations of the human gut microbiome in liver cirrhosis
N Qin, F Yang, A Li, E Prifti, Y Chen, L Shao, J Guo, E Le Chatelier, J Yao, ...
Nature 513 (7516), 59-64, 2014
An integrated catalog of reference genes in the human gut microbiome
J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ...
Nature biotechnology 32 (8), 834-841, 2014
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ...
Gut 65 (3), 426-436, 2016
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
SP Kennedy, WV Ng, SL Salzberg, L Hood, S DasSarma
Genome research 11 (10), 1641-1650, 2001
Specific gut microbiota features and metabolic markers in postmenopausal women with obesity
LK Brahe, E Le Chatelier, E Prifti, N Pons, S Kennedy, T Hansen, ...
Nutrition & diabetes 5 (6), e159-e159, 2015
Microbial ecology perturbation in human IgA deficiency
J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ...
Science translational medicine 10 (439), 2018
Changes of the human gut microbiome induced by a fermented milk product
P Veiga, N Pons, A Agrawal, R Oozeer, D Guyonnet, R Brazeilles, ...
Scientific reports 4 (1), 6328, 2014
Arsenic Resistance in Halobacterium sp. Strain NRC-1 Examined by Using an Improved Gene Knockout System
G Wang, SP Kennedy, S Fasiludeen, C Rensing, S DasSarma
Journal of bacteriology 186 (10), 3187-3194, 2004
Dietary modulation of the gut microbiota–a randomised controlled trial in obese postmenopausal women
LK Brahe, E Le Chatelier, E Prifti, N Pons, S Kennedy, T Blædel, ...
British Journal of Nutrition 114 (3), 406-417, 2015
Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection
JJ Quereda, O Dussurget, MA Nahori, A Ghozlane, S Volant, MA Dillies, ...
Proceedings of the National Academy of Sciences 113 (20), 5706-5711, 2016
Protection of the human gut microbiome from antibiotics
J de Gunzburg, A Ghozlane, A Ducher, E Le Chatelier, X Duval, E Ruppé, ...
The Journal of infectious diseases 217 (4), 628-636, 2018
Overview of a surface-ripened cheese community functioning by meta-omics analyses
E Dugat-Bony, C Straub, A Teissandier, D Onesime, V Loux, C Monnet, ...
PloS one 10 (4), e0124360, 2015
Dietary Patterns Differently Associate with Inflammation and Gut Microbiota in Overweight and Obese Subjects
LC Kong, BA Holmes, A Cotillard, F Habi-Rachedi, R Brazeilles, S Gougis, ...
PloS one 9 (10), e109434, 2014
Prediction of the intestinal resistome by a three-dimensional structure-based method
E Ruppé, A Ghozlane, J Tap, N Pons, AS Alvarez, N Maziers, T Cuesta, ...
Nature microbiology 4 (1), 112-123, 2019
A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae
ME Val, M Marbouty, F de Lemos Martins, SP Kennedy, H Kemble, ...
Science advances 2 (4), e1501914, 2016
In-depth resistome analysis by targeted metagenomics
VF Lanza, F Baquero, JL Martínez, R Ramos-Ruíz, B González-Zorn, ...
Microbiome 6 (1), 1-14, 2018
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