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Mehran Karimzadeh
Mehran Karimzadeh
Exai Bio
Verified email at exai.bio - Homepage
Title
Cited by
Cited by
Year
Variation in genomic landscape of clear cell renal cell carcinoma across Europe
G Scelo, Y Riazalhosseini, L Greger, L Letourneau, M Gonzàlez-Porta, ...
Nature communications 5 (1), 5135, 2014
2102014
Umap and Bismap: quantifying genome and methylome mappability
M Karimzadeh, C Ernst, A Kundaje, MM Hoffman
Nucleic Acids Research 46 (20), e120, 2018
1542018
Massively multiplex single-molecule oligonucleosome footprinting
NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ...
Elife 9, e59404, 2020
792020
A general framework for interrogation of mRNA stability programs identifies RNA-binding proteins that govern cancer transcriptomes
G Perron, P Jandaghi, S Solanki, M Safisamghabadi, C Storoz, ...
Cell Reports 23 (6), 1639-1650, 2018
662018
Top considerations for creating bioinformatics software documentation
M Karimzadeh, MM Hoffman
Briefings in Bioinformatics 19 (4), 693–699, 2017
522017
Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses
A Banerjee, N El-Sayes, P Budylowski, RA Jacob, D Richard, H Maan, ...
IScience 24 (5), 2021
492021
Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome
M Karimzadeh, MM Hoffman
Genome biology 23 (126), https://doi.org/10.1186/s13059-022-02690, 2022
442022
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity
CM McEvoy, JM Murphy, L Zhang, S Clotet-Freixas, JA Mathews, J An, ...
Nature Communications 13 (1), 7634, 2022
392022
To transformers and beyond: large language models for the genome
ME Consens, C Dufault, M Wainberg, D Forster, M Karimzadeh, ...
arXiv preprint arXiv:2311.07621, 2023
292023
Human papillomavirus integration transforms chromatin to drive oncogenesis
M Karimzadeh, C Arlidge, A Rostami, M Lupien, SV Bratman, ...
Genome biology 24 (142), 2023
272023
Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease
M Sugiyama, H Cui, SR Dar'ya, M Karimzadeh, E Rujas, H Maan, S Hayat, ...
Scientific Reports, 2021
142021
The molecular consequences of androgen activity in the human breast
F Raths, M Karimzadeh, N Ing, A Martinez, Y Qu, TY Lee, B Mulligan, ...
Cell Genomics 3 (3), 2023
132023
Analysis of clonal evolution in colorectal cancer.
DM Graham, M Arseneault, MA Sukhai, L Letourneau, M Karimzadeh, ...
Journal of Clinical Oncology 32 (15_suppl), 3510-3510, 2014
92014
Cell–Cell Contact Mediates Gene Expression and Fate Choice of Human Neural Stem/Progenitor Cells
WB McIntyre, M Karimzadeh, Y Riazalhosseini, M Khazaei, MG Fehlings
Cells 11 (11), 1741, 2022
52022
Aberration hubs in protein interaction networks highlight actionable targets in cancer
M Karimzadeh, P Jandaghi, AI Papadakis, S Trainor, J Rung, ...
Oncotarget 9 (38), 25166-25180, 2018
42018
Analytics methods and tools for integration of biomedical data in medicine
L Zhang, M Karimzadeh, M Welch, C McIntosh, B Wang
Artificial Intelligence in Medicine, 113-129, 2021
32021
Semi-automated genome annotation using epigenomic data and Segway
EG Roberts, M Mendez, C Viner, M Karimzadeh, R Chan, R Ancar, ...
bioRxiv, 080382, 2016
22016
Integrative identification of non-coding regulatory regions driving metastatic prostate cancer
BJ Woo, R Moussavi-Baygi, H Karner, M Karimzadeh, H Yousefi, S Lee, ...
Cell reports 43 (9), 2024
12024
Beyond detection: AI-based classification of breast cancer invasiveness using cell-free orphan non-coding RNAs
M Karimzadeh, TB Cavazos, NC Chen, NK Tbeileh, D Siegel, ...
Cancer Research 84 (6_Supplement), 3678-3678, 2024
12024
MA19. 09 AI-Based Early Detection and Subtyping of Non-Small Cell Lung Cancer from Blood Samples Using Orphan Noncoding RNAs
M Karimzadeh, TB Cavazos, J Wang, M Multhaup, Y Fang, J Ku, X Zhao, ...
Journal of Thoracic Oncology 18 (11), S173, 2023
12023
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