| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17656 | 2012 |
| Integrative analysis of 111 reference human epigenomes Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ... Nature 518 (7539), 317-330, 2015 | 6437* | 2015 |
| The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans GTEx Consortium, KG Ardlie, DS Deluca, AV Segrè, TJ Sullivan, ... Science 348 (6235), 648-660, 2015 | 4869 | 2015 |
| Mapping and analysis of chromatin state dynamics in nine human cell types J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ... Nature 473 (7345), 43-49, 2011 | 3388 | 2011 |
| Histone modifications at human enhancers reflect global cell-type-specific gene expression ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ... Nature 459 (7243), 108-112, 2009 | 2998 | 2009 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2360 | 2012 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2316 | 2007 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1498 | 2011 |
| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1304 | 2011 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1113 | 2010 |
| Integrative analysis of 111 reference human epigenomes CR Epigenomics, A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, ... Nature 518 (7539), 317-330, 2015 | 811 | 2015 |
| Genome analysis of the platypus reveals unique signatures of evolution Nature 453 (7192), 175-183, 2008 | 781 | 2008 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007 | 725 | 2007 |
| A cis-regulatory map of the Drosophila genome N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ... Nature 471 (7339), 527-531, 2011 | 592 | 2011 |
| Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments P Kheradpour, M Kellis Nucleic acids research 42 (5), 2976-2987, 2014 | 534 | 2014 |
| Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 468 | 2010 |
| A Comprehensive Map of Insulator Elements for the Drosophila Genome N Nègre, CD Brown, PK Shah, P Kheradpour, CA Morrison, JG Henikoff, ... PLoS genetics 6 (1), e1000814, 2010 | 384 | 2010 |
| Effect of predicted protein-truncating genetic variants on the human transcriptome MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ... Science 348 (6235), 666-669, 2015 | 368 | 2015 |
| Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ... Genome research 23 (5), 800-811, 2013 | 364 | 2013 |
| An epigenetic signature for monoallelic olfactory receptor expression A Magklara, A Yen, BM Colquitt, EJ Clowney, W Allen, ... Cell 145 (4), 555-570, 2011 | 330 | 2011 |
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
