Elio Abbondanzieri
Elio Abbondanzieri
Research Assistant Professor, University of Rochester
Verified email at
Cited by
Cited by
Direct observation of base-pair stepping by RNA polymerase
EA Abbondanzieri, WJ Greenleaf, JW Shaevitz, R Landick, SM Block
Nature 438 (7067), 460-465, 2005
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
JW Shaevitz, EA Abbondanzieri, R Landick, SM Block
Nature 426 (6967), 684-687, 2003
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
KC Neuman, EA Abbondanzieri, R Landick, J Gelles, SM Block
Cell 115 (4), 437-447, 2003
Passive all-optical force clamp for high-resolution laser trapping
WJ Greenleaf, MT Woodside, EA Abbondanzieri, SM Block
Physical review letters 95 (20), 208102, 2005
Dynamic binding orientations direct activity of HIV reverse transcriptase
EA Abbondanzieri, G Bokinsky, JW Rausch, JX Zhang, SFJ Le Grice, ...
Nature 453 (7192), 184-189, 2008
Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates
S Liu, EA Abbondanzieri, JW Rausch, SFJL Grice, X Zhuang
Science 322 (5904), 1092-1097, 2008
Measurement of the effective focal shift in an optical trap
KC Neuman, EA Abbondanzieri, SM Block
Optics letters 30 (11), 1318-1320, 2005
Global DNA compaction in stationary-phase bacteria does not affect transcription
R Janissen, MMA Arens, NN Vtyurina, Z Rivai, ND Sunday, ...
Cell 174 (5), 1188-1199. e14, 2018
Picocalorimetry of transcription by RNA polymerase
EA Abbondanzieri, JW Shaevitz, SM Block
Biophysical journal 89 (6), L61-L63, 2005
DNA sequence encodes the position of DNA supercoils
SH Kim, M Ganji, E Kim, J van der Torre, E Abbondanzieri, C Dekker
Elife 7, e36557, 2018
More than just a phase: the search for membraneless organelles in the bacterial cytoplasm
EA Abbondanzieri, AS Meyer
Current genetics 65 (3), 691-694, 2019
Intercalation-based single-molecule fluorescence assay to study DNA supercoil dynamics
M Ganji, SH Kim, J Van Der Torre, E Abbondanzieri, C Dekker
Nano letters 16 (7), 4699-4707, 2016
DNA binding proteins explore multiple local configurations during docking via rapid rebinding
M Ganji, M Docter, SFJ Le Grice, EA Abbondanzieri
Nucleic acids research 44 (17), 8376-8384, 2016
Hysteresis in DNA compaction by Dps is described by an Ising model
NN Vtyurina, D Dulin, MW Docter, AS Meyer, NH Dekker, ...
Proceedings of the National Academy of Sciences 113 (18), 4982-4987, 2016
Concealed enzyme coordination
EA Abbondanzieri, X Zhuang
Nature 457 (7228), 392-393, 2009
Nucleoid reorganization by the stress response protein Dps
EA Abbondanzieri, N Vtyurina, A Meyer
Biophysical Journal 106 (2), 79a, 2014
Determining relative and absolute axial displacement in optical traps
KC Neuman, E Abbondanzieri, TT Perkins, SM Block
BIOPHYSICAL JOURNAL 80 (1), 163A-163A, 2001
Chromosome reorganization by the highly cooperative Dps protein
N Vtyurina, D Dulin, M Docter, N Dekker, A Meyer, E Abbondanzieri
Biophysical Journal 108 (2), 15a, 2015
High-resolution single-molecule optical trapping measurements of transcription with basepair accuracy: instrumentation and methods
WJ Greenleaf, KL Frieda, EA Abbondanzieri, MT Woodside, SM Block
Optical Trapping and Optical Micromanipulation IV 6644, 39-46, 2007
The mechanics of* transcription by RNA polymerase
EA Abbondanzieri
Stanford University, 2006
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