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Bryan Merrill
Bryan Merrill
PhD / Microbiology and Immunology, #opentowork
Verified email at alumni.stanford.edu - Homepage
Title
Cited by
Cited by
Year
A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites
D Dodd, MH Spitzer, W Van Treuren, BD Merrill, AJ Hryckowian, ...
Nature 551 (7682), 648-652, 2017
9702017
Gut-microbiota-targeted diets modulate human immune status
HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ...
Cell 184 (16), 4137-4153. e14, 2021
7112021
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature microbiology 6 (1), 3-6, 2021
4742021
A metabolomics pipeline for the mechanistic interrogation of the gut microbiome
S Han, W Van Treuren, CR Fischer, BD Merrill, BC DeFelice, JM Sanchez, ...
Nature 595 (7867), 415-420, 2021
2362021
Transient osmotic perturbation causes long-term alteration to the gut microbiota
C Tropini, EL Moss, BD Merrill, KM Ng, SK Higginbottom, EP Casavant, ...
Cell 173 (7), 1742-1754. e17, 2018
2122018
Recovery of the gut microbiota after antibiotics depends on host diet, community context, and environmental reservoirs
KM Ng, A Aranda-Díaz, C Tropini, MR Frankel, W Van Treuren, ...
Cell host & microbe 26 (5), 650-665. e4, 2019
2112019
Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron
NT Porter, AJ Hryckowian, BD Merrill, JJ Fuentes, JO Gardner, ...
Nature microbiology 5 (9), 1170-1181, 2020
992020
Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies
BD Merrill, AT Ward, JH Grose, S Hope
BMC genomics 17, 1-16, 2016
952016
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles
MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ...
Science 376 (6598), 1220-1223, 2022
872022
Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
822021
Bacteroides thetaiotaomicron-infecting bacteriophage isolates inform sequence-based host range predictions
AJ Hryckowian, BD Merrill, NT Porter, W Van Treuren, EJ Nelson, ...
Cell Host & Microbe 28 (3), 371-379. e5, 2020
652020
DDX6 represses aberrant activation of interferon-stimulated genes
JH Lumb, Q Li, LM Popov, S Ding, MT Keith, BD Merrill, HB Greenberg, ...
Cell reports 20 (4), 819-831, 2017
632017
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes
MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi, SP Spencer, ...
Cell 186 (14), 3111-3124. e13, 2023
542023
Bacteriophages as an alternative to conventional antibiotic use for the prevention or treatment of Paenibacillus larvae in honeybee hives
TS Brady, BD Merrill, JA Hilton, AM Payne, MB Stephenson, S Hope
Journal of invertebrate pathology 150, 94-100, 2017
432017
Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages
BD Merrill, JH Grose, DP Breakwell, SH Burnett
BMC genomics 15, 1-19, 2014
382014
The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors
JH Grose, DM Belnap, JD Jensen, AD Mathis, JT Prince, BD Merrill, ...
Journal of Virology 88 (20), 11846-11860, 2014
362014
Genome sequences of 19 novel Erwinia amylovora bacteriophages
IND Esplin, JA Berg, R Sharma, RC Allen, DK Arens, CR Ashcroft, ...
Genome announcements 5 (46), 10.1128/genomea. 00931-17, 2017
252017
Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel bastille-like group of phages in the subfamily Spounavirinae
PT Asare, TY Jeong, S Ryu, J Klumpp, MJ Loessner, BD Merrill, KP Kim
BMC genomics 16, 1-15, 2015
252015
Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages
JA Berg, BD Merrill, JT Crockett, KP Esplin, MR Evans, KE Heaton, ...
PloS one 11 (6), e0156838, 2016
202016
Complete genome sequences of five Paenibacillus larvae bacteriophages
MA Sheflo, AV Gardner, BD Merrill, JNB Fisher, BL Lunt, DP Breakwell, ...
Genome announcements 1 (6), 10.1128/genomea. 00668-13, 2013
172013
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