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Ray Luo
Ray Luo
Molecular Biology and Biochemistry, Biomedical Engineering, and Chemical and Biomolecular
Verified email at uci.edu - Homepage
Title
Cited by
Cited by
Year
The Amber biomolecular simulation programs
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...
Journal of computational chemistry 26 (16), 1668-1688, 2005
97622005
Amber 10; 2008
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2008
8948*2008
Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
54252021
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
J. Comput. Chem 24, 1999-2012, 0
4977*
AMBER 9; 2006
DA Case, TA Dardern, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2006
3690*2006
Amber 14
DA Case, V Babin, J Berryman, RM Betz, Q Cai, DS Cerutti, ...
University of California, San Francisco, 2014
645*2014
Accelerated Poisson–Boltzmann calculations for static and dynamic systems
R Luo, L David, MK Gilson
Journal of computational chemistry 23 (13), 1244-1253, 2002
5372002
AMBER 2018, University of California, San Francisco, 2018
DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ...
There is no corresponding record for this reference, 2018
515*2018
Recent Developments and Applications of the MMPBSA Method
C Wang, DA Greene, L Xiao, R Qi, R Luo
Frontiers in Molecular Biosciences 4, 87, 2018
4652018
AMBER 12 University of California
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
San Francisco 1 (3), 2012
396*2012
AMBER11. University of California, San Francisco
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2010
3242010
Implicit nonpolar solvent models
C Tan, YH Tan, R Luo
The Journal of Physical Chemistry B 111 (42), 12263-12274, 2007
2642007
New-generation amber united-atom force field
L Yang, C Tan, MJ Hsieh, J Wang, Y Duan, P Cieplak, J Caldwell, ...
The journal of physical chemistry B 110 (26), 13166-13176, 2006
2512006
Virtual screening using molecular simulations
T Yang, JC Wu, C Yan, Y Wang, R Luo, MB Gonzales, KN Dalby, P Ren
Proteins: Structure, Function, and Bioinformatics 79 (6), 1940-1951, 2011
2132011
AmberTools
DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ...
Journal of Chemical Information and Modeling 63 (20), 6214–6224, 2023
2092023
Calculating protein–ligand binding affinities with MMPBSA: Method and error analysis
C Wang, PH Nguyen, K Pham, D Huynh, TBN Le, H Wang, P Ren, R Luo
Journal of computational chemistry 37 (27), 2436-2446, 2016
2082016
How well does Poisson−Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis
C Tan, L Yang, R Luo
The Journal of Physical Chemistry B 110 (37), 18680-18687, 2006
1972006
A Poisson–Boltzmann dynamics method with nonperiodic boundary condition
Q Lu, R Luo
The Journal of chemical physics 119 (21), 11035-11047, 2003
1872003
The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins
D Song, R Luo, HF Chen
Journal of Chemical Information and Modeling 57 (5), 1166-1178, 2017
1702017
Development of polarizable models for molecular mechanical calculations I: parameterization of atomic polarizability
J Wang, P Cieplak, J Li, T Hou, R Luo, Y Duan
The Journal of Physical Chemistry B 115 (12), 3091-3099, 2011
1682011
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Articles 1–20