Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm VH Thanh, C Priami The Journal of chemical physics 143 (5), 2015 | 64 | 2015 |
Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays VH Thanh, C Priami, R Zunino The Journal of chemical physics 141 (13), 2014 | 57 | 2014 |
Simulation Algorithms for Computational Systems Biology L Marchetti, C Priami, VH Thanh Springer, 2017 | 52* | 2017 |
HRSSA–Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks L Marchetti, C Priami, VH Thanh Journal of Computational Physics 317, 301-317, 2016 | 37 | 2016 |
On the rejection-based algorithm for simulation and analysis of large-scale reaction networks VH Thanh, R Zunino, C Priami The Journal of Chemical Physics 142 (24), 2015 | 33 | 2015 |
Efficient constant-time complexity algorithm for stochastic simulation of large reaction networks VH Thanh, R Zunino, C Priami IEEE/ACM transactions on computational biology and bioinformatics 14 (3 …, 2016 | 31 | 2016 |
Tree-based search for stochastic simulation algorithm VH Thanh, R Zunino Proceedings of the 27th Annual ACM Symposium on Applied Computing, 1415-1416, 2012 | 23 | 2012 |
Adaptive tree-based search for stochastic simulation algorithm VH Thanh, R Zunino International journal of computational biology and drug design 7 (4), 341-357, 2014 | 21 | 2014 |
Efficient stochastic simulation of biochemical reactions with noise and delays VH Thanh, R Zunino, C Priami The Journal of Chemical Physics 146 (8), 2017 | 19 | 2017 |
On Efficient Algorithms for Stochastic Simulation of Biochemical Reaction Systems VH Thanh University of Trento, Italy, 2013 | 17* | 2013 |
Parallel stochastic simulation of biochemical reaction systems on multi-core processors VH Thanh, R Zunino Proc. of CSSim, 162-170, 2011 | 15 | 2011 |
Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability VH Thanh, C Priami, R Zunino The Journal of Chemical Physics 144 (22), 2016 | 13 | 2016 |
A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology G Simoni, HT Vo, C Priami, L Marchetti Briefings in bioinformatics 21 (2), 527-540, 2020 | 12 | 2020 |
Efficient finite-difference method for computing sensitivities of biochemical reactions VH Thanh, R Zunino, C Priami Proceedings of the Royal Society A: Mathematical, Physical and Engineering …, 2018 | 11 | 2018 |
Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches VH Thanh, L Marchetti, F Reali, C Priami The Journal of chemical physics 148 (6), 2018 | 11 | 2018 |
A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks VH Thanh Bulletin of mathematical biology 81, 3053-3073, 2019 | 10 | 2019 |
Stochastic simulation of biochemical reactions with partial-propensity and rejection-based approaches VH Thanh Mathematical biosciences 292, 67-75, 2017 | 6 | 2017 |
Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions VH Thanh IET systems biology 13 (1), 16-23, 2019 | 3 | 2019 |
Simulation of Mixed Traffic Flow within Intersection VH Thanh, TV Hoai Second International Conference on Conference: Knowledge and Systems …, 2010 | 3 | 2010 |
Cotranscriptional kinetic folding of RNA secondary structures including pseudoknots VH Thanh, D Korpela, P Orponen Journal of Computational Biology 28 (9), 892-908, 2021 | 2 | 2021 |