Michal Otyepka

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Radek ZbořilCATRIN, Palacký University Olomouc; CEET, Nanotechnology Centre VŠB Technical University of OstravaVerified email at upol.cz
Pavel BanášCzech Advanced Technology and Research Institute CATRIN, Palacky University OlomoucVerified email at upol.cz
Aristides BakandritsosCATRIN, Palacký University Olomouc; CEET, Nanotechnology Centre VŠB Technical University of OstravaVerified email at upol.cz
Miroslav MedvedAssociate Professor in Chemistry, Matej Bel University in Banska Bystrica, SlovakiaVerified email at umb.sk
Markéta PaloncýováCATRIN, Palacký UniversityVerified email at upol.cz
Dr. Jayaramulu KolleboyinaAssistant professor, IIT Jammu, IndiaVerified email at iitjammu.ac.in
Bourlinos ThanosProfessor, University of Ioannina, Physics DepartmentVerified email at uoi.gr
Roland A. FischerTechnical University of MunichVerified email at tum.de
Martin PumeraProfessor, Head of Future Energy & Innovation Lab, CEITEC Brno; Adv Nanorobots, TU OstravaVerified email at ceitec.vutbr.cz
Nils G WalterUniversity of Michigan, Ann ArborVerified email at umich.edu
Patrick TrouillasUniversité de LimogesVerified email at unilim.fr
Vasilis GeorgakilasProfessor, University of Patras, Department of Materials ScienceVerified email at upatras.gr
Michal LangerResearcher, It4Innovations, VSB-Technical University of OstravaVerified email at vsb.cz
David PanáčekCATRIN, Palacký University Olomouc; CEET, Nanotechnology Centre VŠB Technical University of OstravaVerified email at upol.cz
Andrey RogachChair Professor, City University of Hong KongVerified email at cityu.edu.hk
Lukáš ZdražilCATRIN, Palacky University Olomouc, CEET, Nanotechnology Centre VŠB Technical University of OstravaVerified email at upol.cz
Manoj B. GAWANDE, FICS, FMASc, F...Associate Professor, Institute of Chemical Technology Mumbai-Marathwada CampusVerified email at upol.cz
Pavel JelínekInstitute of Physics, Czech Academy of Sciences, Czech RepublicVerified email at fzu.cz
Hans LischkaProfessor of Chemistry, Texas Tech UniversityVerified email at ttu.edu
Stefano AgnoliUniversity of Padova

Michal Otyepka

CATRIN, Palacký University; IT4Innovations, VŠB Technical University of Ostrava

Verified email at upol.cz

nanotechnology biosensing molecular modeling carbon dots inkjet printing


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Functionalization of graphene: covalent and non-covalent approaches, derivatives and applications V Georgakilas, M Otyepka, AB Bourlinos, V Chandra, N Kim, KC Kemp, ... Chemical reviews 112 (11), 6156-6214, 2012	4552	2012
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles M Zgarbová, M Otyepka, J Sponer, A Mladek, P Banas, TE Cheatham III, ... Journal of chemical theory and computation 7 (9), 2886-2902, 2011	1000	2011
Graphitic nitrogen triggers red fluorescence in carbon dots K Hola, M Sudolská, S Kalytchuk, D Nachtigallová, AL Rogach, ... ACS nano 11 (12), 12402-12410, 2017	672	2017
CAVER: a new tool to explore routes from protein clefts, pockets and cavities M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský BMC bioinformatics 7, 1-9, 2006	645	2006
Stabilizing and modulating color by copigmentation: Insights from theory and experiment P Trouillas, JC Sancho-García, V De Freitas, J Gierschner, M Otyepka, ... Chemical reviews 116 (9), 4937-4982, 2016	557	2016
Adsorption of small organic molecules on graphene P Lazar, F Karlicky, P Jurecka, M Kocman, E Otyepková, K Šafářová, ... Journal of the American Chemical Society 135 (16), 6372-6377, 2013	507	2013
Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ... Journal of chemical theory and computation 11 (12), 5723-5736, 2015	504	2015
Graphene fluoride: a stable stoichiometric graphene derivative and its chemical conversion to graphene R Zbořil, F Karlický, AB Bourlinos, TA Steriotis, AK Stubos, V Georgakilas, ... small 6 (24), 2885-2891, 2010	493	2010
RNA structural dynamics as captured by molecular simulations: a comprehensive overview J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical reviews 118 (8), 4177-4338, 2018	474	2018
Assessing the current state of amber force field modifications for DNA R Galindo-Murillo, JC Robertson, M Zgarbova, J Sponer, M Otyepka, ... Journal of chemical theory and computation 12 (8), 4114-4127, 2016	446	2016
Halogenated graphenes: rapidly growing family of graphene derivatives F Karlicky, K Kumara Ramanatha Datta, M Otyepka, R Zboril ACS nano 7 (8), 6434-6464, 2013	430	2013
Biomimetic superhydrophobic/superoleophilic highly fluorinated graphene oxide and ZIF‐8 composites for oil–water separation K Jayaramulu, KKR Datta, C Rösler, M Petr, M Otyepka, R Zboril, ... Angewandte Chemie International Edition 55 (3), 1178-1182, 2016	411	2016
Performance of molecular mechanics force fields for RNA simulations: stability of UUCG and GNRA hairpins P Banás, D Hollas, M Zgarbová, P Jurecka, M Orozco, TE Cheatham III, ... Journal of Chemical Theory and Computation 6 (12), 3836-3849, 2010	399	2010
MOLE 2.0: advanced approach for analysis of biomacromolecular channels D Sehnal, R Svobodová Vařeková, K Berka, L Pravda, V Navrátilová, ... Journal of cheminformatics 5, 1-13, 2013	331	2013
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ... Nature chemical biology 5 (10), 727-733, 2009	323	2009
MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels M Petřek, P Košinová, J Koča, M Otyepka Structure 15 (11), 1357-1363, 2007	304	2007
Toward improved description of DNA backbone: revisiting epsilon and zeta torsion force field parameters M Zgarbová, FJ Luque, J Sponer, TE Cheatham III, M Otyepka, P Jurecka Journal of chemical theory and computation 9 (5), 2339-2354, 2013	303	2013
Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission K Hola, AB Bourlinos, O Kozak, K Berka, KM Siskova, M Havrdova, ... Carbon 70, 279-286, 2014	284	2014
Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA, and Z-DNA M Krepl, M Zgarbová, P Stadlbauer, M Otyepka, P Banas, J Koca, ... Journal of chemical theory and computation 8 (7), 2506-2520, 2012	281	2012
Chemistry, properties, and applications of fluorographene DD Chronopoulos, A Bakandritsos, M Pykal, R Zbořil, M Otyepka Applied materials today 9, 60-70, 2017	280	2017

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