Follow
Alexandre Colavin
Alexandre Colavin
Graduate Student, Stanford University
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
A comprehensive, CRISPR-based functional analysis of essential genes in bacteria
JM Peters, A Colavin, H Shi, TL Czarny, MH Larson, S Wong, JS Hawkins, ...
Cell 165 (6), 1493-1506, 2016
6712016
Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization
TS Ursell, J Nguyen, RD Monds, A Colavin, G Billings, N Ouzounov, ...
Proceedings of the National Academy of Sciences 111 (11), E1025-E1034, 2014
2872014
Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division
AN Gray, AJF Egan, IL Van't Veer, J Verheul, A Colavin, A Koumoutsi, ...
elife 4, e07118, 2015
1892015
Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library
T Ursell, TK Lee, D Shiomi, H Shi, C Tropini, RD Monds, A Colavin, ...
BMC biology 15, 1-15, 2017
1212017
Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness
RD Monds, TK Lee, A Colavin, T Ursell, S Quan, TF Cooper, KC Huang
Cell reports 9 (4), 1528-1537, 2014
682014
Deep phenotypic mapping of bacterial cytoskeletal mutants reveals physiological robustness to cell size
H Shi, A Colavin, M Bigos, C Tropini, RD Monds, KC Huang
Current Biology 27 (22), 3419-3429. e4, 2017
652017
RodZ modulates geometric localization of the bacterial actin MreB to regulate cell shape
A Colavin, H Shi, KC Huang
Nature communications 9 (1), 1280, 2018
622018
Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB
A Colavin, J Hsin, KC Huang
Biophysical Journal 106 (2), 169a, 2014
512014
Spectrum of splicing variants in disease genes and the ability of RNA analysis to reduce uncertainty in clinical interpretation
R Truty, K Ouyang, S Rojahn, S Garcia, A Colavin, B Hamlington, ...
The American Journal of Human Genetics 108 (4), 696-708, 2021
482021
Coupling between protein stability and catalytic activity determines pathogenicity of G6PD variants
AD Cunningham, A Colavin, KC Huang, D Mochly-Rosen
Cell reports 18 (11), 2592-2599, 2017
462017
Strain Library Imaging Protocol for high-throughput, automated single-cell microscopy of large bacterial collections arrayed on multiwell plates
H Shi, A Colavin, TK Lee, KC Huang
Nature Protocols 12 (2), 429-438, 2017
372017
Extracting phylogenetic dimensions of coevolution reveals hidden functional signals
A Colavin, E Atolia, AF Bitbol, KC Huang
Scientific Reports 12 (1), 820, 2022
122022
485 Marta E, Shiver AL, Whitehead EH, Weissman JS, Brown ED, Qi LS, Huang KC, Gross CA. 486 2016. A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in 487 …
JM Peters, A Colavin, H Shi, TL Czarny, MH Larson, S Wong, JS Hawkins, ...
Cell 165, 1493-1506, 0
11
Applications of artificial intelligence in clinical laboratory genomics
S Aradhya, FM Facio, H Metz, T Manders, A Colavin, Y Kobayashi, ...
American Journal of Medical Genetics Part C: Seminars in Medical Genetics …, 2023
92023
Systems and Methods for the Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework
CL Araya, JA Reuter, SR Padigepati, A Colavin
US Patent App. 16/011,753, 2018
82018
Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation
W van Loggerenberg, S Sowlati-Hashjin, J Weile, R Hamilton, A Chawla, ...
The American Journal of Human Genetics 110 (10), 1769-1786, 2023
72023
Coordination of peptidoglycan synthesis and outer membrane constriction during
AN Gray, AJ Egan, IL Van’t Veer, J Verheul, A Colavin, A Koumoutsi, ...
Escherichia coli, 2015
62015
Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework
CL Araya, JA Reuter, SR Padigepati, A Colavin
US Patent App. 16/624,225, 2021
52021
Conservation of conformational dynamics across prokaryotic actins
N Ng, H Shi, A Colavin, KC Huang
PLoS Computational Biology 15 (4), e1006683, 2019
52019
Molecular evidence platform for auditable, continuous optimization of variant interpretation in genetic and genomic testing and analysis
A Colavin, CL Araya, JA Reuter
US Patent 11,462,299, 2022
42022
The system can't perform the operation now. Try again later.
Articles 1–20