Timothy Bailey

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William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Charles E. GrantUniversity of WashingtonVerified email at uw.edu
Mikael BodenThe University of QueenslandVerified email at uq.edu.au
Fabian A. BuskeGarvan Institute of Medical ResearchVerified email at garvan.org.au
Martin FrithUniversity of Tokyo, National Institute of Advanced Industrial Science and Technology (AIST)Verified email at edu.k.u-tokyo.ac.jp
Charles ElkanProfessor of Computer Science, University of California, San DiegoVerified email at ucsd.edu
Michael GribskovPurdue UniversityVerified email at purdue.edu
Wilfred W. LiUniversity of California, San DiegoVerified email at ucsd.edu
Denis C. BauerCSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics TeamVerified email at csiro.au
Andrew PerkinsProfessor of Cancer GenomicsVerified email at monash.edu
Tom WhitingtonSchibstedVerified email at schibsted.com
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
Prof. Sean M. GrimmondCollaborative Centre for Genomic Cancer Medicine, University of MelbourneVerified email at unimelb.edu.au
Michael E. BakerResearch Professor, University of California, San DiegoVerified email at ucsd.edu
Bostjan KobeProfessor of Structural Biology, The University of QueenslandVerified email at uq.edu.au
George ChurchHarvard Medical SchoolVerified email at harvard.edu
Chun Jimmie YeProfessor of Medicine, UCSFVerified email at ucsf.edu
Saurabh SinhaBiomedical Engineering, Georgia Institute of TechnologyVerified email at bme.gatech.edu
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu

Timothy Bailey

University of Nevada, Reno

Verified email at unr.edu - Homepage

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009	9900	2009
Fitting a mixture model by expectation maximization to discover motifs in bipolymers TL Bailey, C Elkan Department of Computer Science and Engineering, University of California …, 1994	6387	1994
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	4148	2005
FIMO: scanning for occurrences of a given motif CE Grant, TL Bailey, WS Noble Bioinformatics 27 (7), 1017-1018, 2011	4136	2011
The MEME suite TL Bailey, J Johnson, CE Grant, WS Noble Nucleic acids research 43 (W1), W39-W49, 2015	3493	2015
MEME: discovering and analyzing DNA and protein sequence motifs TL Bailey, N Williams, C Misleh, WW Li Nucleic acids research 34 (suppl_2), W369-W373, 2006	2872	2006
Quantifying similarity between motifs S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble Genome biology 8, 1-9, 2007	2058	2007
MEME-ChIP: motif analysis of large DNA datasets P Machanick, TL Bailey Bioinformatics 27 (12), 1696-1697, 2011	1803	2011
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1621	2005
Combining evidence using p-values: application to sequence homology searches. TL Bailey, M Gribskov Bioinformatics (Oxford, England) 14 (1), 48-54, 1998	1487	1998
DREME: motif discovery in transcription factor ChIP-seq data TL Bailey Bioinformatics 27 (12), 1653-1659, 2011	1210	2011
Unsupervised learning of multiple motifs in biopolymers using expectation maximization TL Bailey, C Elkan Machine learning 21, 51-80, 1995	991	1995
The value of prior knowledge in discovering motifs with MEME. TL Bailey, C Elkan Ismb 3, 21-29, 1995	928	1995
Defining the RGG/RG motif P Thandapani, TR O’Connor, TL Bailey, S Richard Molecular cell 50 (5), 613-623, 2013	727	2013
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data RC McLeay, TL Bailey BMC bioinformatics 11, 1-11, 2010	684	2010
Inferring direct DNA binding from ChIP-seq TL Bailey, P Machanick Nucleic acids research 40 (17), e128-e128, 2012	536	2012
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014	524	2014
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	422	2009
STREME: accurate and versatile sequence motif discovery TL Bailey Bioinformatics 37 (18), 2834-2840, 2021	420	2021
Discovering sequence motifs with arbitrary insertions and deletions MC Frith, NFW Saunders, B Kobe, TL Bailey PLoS computational biology 4 (5), e1000071, 2008	411	2008

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