Mathieu Almeida
Mathieu Almeida
Research Fellow at INRAE MetaGenoPolis, France
Verified email at
Cited by
Cited by
Enterotypes of the human gut microbiome.
DJ Arumugam M, Raes J, Pelletier E, Le Paslier D, ...
Nature 473 (7346), 174-180, 2011
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
Nature, 2012
Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
Dietary intervention impact on gut microbial gene richness
A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ...
Nature 500 (7464), 585-588, 2013
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ...
Nature 528 (7581), 262, 2015
Human gut microbes impact host serum metabolome and insulin sensitivity
HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ...
Nature 535 (7612), 376-381, 2016
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ...
Gut 65 (3), 426-436, 2016
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
Quantifying diet-induced metabolic changes of the human gut microbiome
S Shoaie, P Ghaffari, P Kovatcheva-Datchary, A Mardinoglu, P Sen, ...
Cell metabolism 22 (2), 320-331, 2015
Microbial ecology perturbation in human IgA deficiency
J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ...
Science translational medicine 10 (439), eaan1217, 2018
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
F Plaza Oñate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ...
Bioinformatics 35 (9), 1544-1552, 2019
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
M Almeida, A Hébert, AL Abraham, S Rasmussen, C Monnet, N Pons, ...
BMC genomics 15, 1-16, 2014
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
G Bwire, DA Sack, M Almeida, S Li, JB Voeglein, AK Debes, A Kagirita, ...
PLoS neglected tropical diseases 12 (6), e0006492, 2018
Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232
C Delorme, C Bartholini, M Luraschi, N Pons, V Loux, M Almeida, ...
Journal of bacteriology 193 (19), 5581-5582, 2011
Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants
JN Paulson, BL Williams, C Hehnly, N Mishra, SA Sinnar, L Zhang, ...
Science translational medicine 12 (563), eaba0565, 2020
Comparative methods for fecal sample storage to preserve gut microbial structure and function in an in vitro model of the human colon
C Deschamps, E Fournier, O Uriot, F Lajoie, C Verdier, S Comtet-Marre, ...
Applied Microbiology and Biotechnology 104, 10233-10247, 2020
A data integration multi-omics approach to study calorie restriction-induced changes in insulin sensitivity
MC Dao, N Sokolovska, R Brazeilles, S Affeldt, V Pelloux, E Prifti, ...
Frontiers in physiology 9, 1958, 2019
Direct detection of Shigella in stool specimens by use of a metagenomic approach
J Liu, M Almeida, F Kabir, S Shakoor, S Qureshi, A Zaidi, S Li, ...
Journal of clinical microbiology 56 (2), 10.1128/jcm. 01374-17, 2018
Elevated serum ceramides are linked with obesity-associated gut dysbiosis and impaired glucose metabolism
BD Kayser, E Prifti, M Lhomme, E Belda, MC Dao, J Aron-Wisnewsky, ...
Metabolomics 15, 1-13, 2019
Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania
Y Kachwamba, AA Mohammed, H Lukupulo, L Urio, M Majigo, F Mosha, ...
BMC infectious diseases 17 (1), 1-6, 2017
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