| Enterotypes of the human gut microbiome. DJ Arumugam M, Raes J, Pelletier E, Le Paslier D, ... Nature 473 (7346), 174-180, 2011 | 7720 | 2011 |
| A metagenome-wide association study of gut microbiota in type 2 diabetes J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ... Nature, 2012 | 6515 | 2012 |
| Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013 | 4450 | 2013 |
| Dietary intervention impact on gut microbial gene richness A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ... Nature 500 (7464), 585-588, 2013 | 1955 | 2013 |
| Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262, 2015 | 1843 | 2015 |
| Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016 | 1638 | 2016 |
| Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ... Gut 65 (3), 426-436, 2016 | 1638 | 2016 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 1015 | 2014 |
| Quantifying diet-induced metabolic changes of the human gut microbiome S Shoaie, P Ghaffari, P Kovatcheva-Datchary, A Mardinoglu, P Sen, ... Cell metabolism 22 (2), 320-331, 2015 | 369 | 2015 |
| Microbial ecology perturbation in human IgA deficiency J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ... Science translational medicine 10 (439), eaan1217, 2018 | 236 | 2018 |
| MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data F Plaza Oñate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ... Bioinformatics 35 (9), 1544-1552, 2019 | 96 | 2019 |
| Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products M Almeida, A Hébert, AL Abraham, S Rasmussen, C Monnet, N Pons, ... BMC genomics 15, 1-16, 2014 | 90 | 2014 |
| Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS G Bwire, DA Sack, M Almeida, S Li, JB Voeglein, AK Debes, A Kagirita, ... PLoS neglected tropical diseases 12 (6), e0006492, 2018 | 44 | 2018 |
| Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232 C Delorme, C Bartholini, M Luraschi, N Pons, V Loux, M Almeida, ... Journal of bacteriology 193 (19), 5581-5582, 2011 | 43 | 2011 |
| Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants JN Paulson, BL Williams, C Hehnly, N Mishra, SA Sinnar, L Zhang, ... Science translational medicine 12 (563), eaba0565, 2020 | 38 | 2020 |
| Comparative methods for fecal sample storage to preserve gut microbial structure and function in an in vitro model of the human colon C Deschamps, E Fournier, O Uriot, F Lajoie, C Verdier, S Comtet-Marre, ... Applied Microbiology and Biotechnology 104, 10233-10247, 2020 | 34 | 2020 |
| A data integration multi-omics approach to study calorie restriction-induced changes in insulin sensitivity MC Dao, N Sokolovska, R Brazeilles, S Affeldt, V Pelloux, E Prifti, ... Frontiers in physiology 9, 1958, 2019 | 34 | 2019 |
| Direct detection of Shigella in stool specimens by use of a metagenomic approach J Liu, M Almeida, F Kabir, S Shakoor, S Qureshi, A Zaidi, S Li, ... Journal of clinical microbiology 56 (2), 10.1128/jcm. 01374-17, 2018 | 34 | 2018 |
| Elevated serum ceramides are linked with obesity-associated gut dysbiosis and impaired glucose metabolism BD Kayser, E Prifti, M Lhomme, E Belda, MC Dao, J Aron-Wisnewsky, ... Metabolomics 15, 1-13, 2019 | 32 | 2019 |
| Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania Y Kachwamba, AA Mohammed, H Lukupulo, L Urio, M Majigo, F Mosha, ... BMC infectious diseases 17 (1), 1-6, 2017 | 31 | 2017 |
Nicolas PonsResearch Engineer in BioinformaticsVerified email at inrae.fr
